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0.5.0 - Code Optimization - ROI extraction in DLPrepapreData
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@omar-rifai omar-rifai released this 06 Aug 21:00
· 725 commits to dev since this release
v0.5.0
3a86f1f

Clinica 0.5 -

Added

  • [Docs] Add missing documentation on check-missing-processing iotool
  • [deeplearning-prepare-data]: Add option to run pipeline with ROI for tensor_format option to extract region of interest according to a mask.

Changed

  • [Core] Improve Logging for Clinica
  • [Core] Improve CLI through using click
  • [Core] Nibabel replace get_data() by get_fdata() method for dataobj_images (nibabel)
  • [ADNI converter] Optimization of adni2bids clincal data extraction
  • [ADNI converter] Replace xlsx by tsv files for clinical data specification
  • [Converters] Remove dcm2nii fallback
  • [AIBL converter] Remove freesurfer fallback and dependency

Fixed

  • [Core] fix bug in write_scan_tsv
  • [Docs] Add documentation for check-missing-processing
  • [Docs] Fix several small typos
  • [Docs] Instructions for installing SPM dependency on MacOs Big Sur
  • [CI] Fix several small issues with non-regression tests
  • [CI] Fix typo in Jenkins script
  • [CI] Automatically delete conda environments after PR is merged
  • [Iotools] fix indices in merge-tsv
  • [ML] Fix unresolved reference in SVM pipeline
  • [ML] Fix typo in parameters for SVC pipeline
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