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debugging-failed-libmeshbuild-with-two-petscs-in-system.txt
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debugging-failed-libmeshbuild-with-two-petscs-in-system.txt
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########################################
Full bit
########################################
libtool: link:
ccache clang++ -std=gnu++11 -O0 -felide-constructors -g -pedantic -W -Wall -Wextra -Wno-long-long -Wunused -Wpointer-arith -Wformat -Wparentheses -Qunused-arguments -Woverloaded-virtual -fopenmp -std=gnu++11 -o .libs/unit_tests-dbg unit_tests_dbg-driver.o base/unit_tests_dbg-default_coupling_test.o base/unit_tests_dbg-getpot_test.o base/unit_tests_dbg-point_neighbor_coupling_test.o base/unit_tests_dbg-auto_ptr_test.o fe/unit_tests_dbg-fe_bernstein_test.o fe/unit_tests_dbg-fe_clough_test.o fe/unit_tests_dbg-fe_hermite_test.o fe/unit_tests_dbg-fe_hierarchic_test.o fe/unit_tests_dbg-fe_l2_hierarchic_test.o fe/unit_tests_dbg-fe_l2_lagrange_test.o fe/unit_tests_dbg-fe_lagrange_test.o fe/unit_tests_dbg-fe_monomial_test.o fe/unit_tests_dbg-fe_szabab_test.o fe/unit_tests_dbg-fe_xyz_test.o geom/unit_tests_dbg-node_test.o geom/unit_tests_dbg-point_test.o mesh/unit_tests_dbg-all_tri.o mesh/unit_tests_dbg-boundary_mesh.o mesh/unit_tests_dbg-boundary_info.o mesh/unit_tests_dbg-checkpoint.o mesh/unit_tests_dbg-contains_point.o mesh/unit_tests_dbg-mixed_dim_mesh_test.o mesh/unit_tests_dbg-nodal_neighbors.o mesh/unit_tests_dbg-mesh_extruder.o mesh/unit_tests_dbg-slit_mesh_test.o mesh/unit_tests_dbg-spatial_dimension_test.o mesh/unit_tests_dbg-mesh_function_dfem.o numerics/unit_tests_dbg-composite_function_test.o numerics/unit_tests_dbg-coupling_matrix_test.o numerics/unit_tests_dbg-distributed_vector_test.o numerics/unit_tests_dbg-eigen_sparse_vector_test.o numerics/unit_tests_dbg-laspack_vector_test.o numerics/unit_tests_dbg-parsed_fem_function_test.o numerics/unit_tests_dbg-parsed_function_test.o numerics/unit_tests_dbg-petsc_vector_test.o numerics/unit_tests_dbg-trilinos_epetra_vector_test.o numerics/unit_tests_dbg-vector_value_test.o numerics/unit_tests_dbg-type_tensor_test.o numerics/unit_tests_dbg-dense_matrix_test.o parallel/unit_tests_dbg-packed_range_test.o parallel/unit_tests_dbg-parallel_test.o parallel/unit_tests_dbg-parallel_point_test.o quadrature/unit_tests_dbg-quadrature_test.o solvers/unit_tests_dbg-first_order_unsteady_solver_test.o solvers/unit_tests_dbg-second_order_unsteady_solver_test.o systems/unit_tests_dbg-equation_systems_test.o systems/unit_tests_dbg-systems_test.o utils/unit_tests_dbg-point_locator_test.o utils/unit_tests_dbg-vectormap_test.o fparser/unit_tests_dbg-autodiff.o -Wl,-rpath -Wl,/opt/moose/tbb/lib -Wl,-rpath -Wl,/opt/moose/petsc/mpich_petsc-3.7.4/clang-opt-superlu/lib -Wl,-rpath -Wl,/opt/moose/gcc-6.2.0/lib/gcc/x86_64-pc-linux-gnu/6.2.0 -Wl,-rpath -Wl,/opt/moose/gcc-6.2.0/lib64 -Wl,-rpath -Wl,/lib/x86_64-linux-gnu -Wl,-rpath -Wl,/opt/moose/gcc-6.2.0/lib -Wl,-rpath -Wl,/opt/moose/mpich/mpich-3.2/clang-opt/lib -Wl,-rpath -Wl,/opt/moose/llvm-3.9.0/lib -Wl,-rpath -Wl,/usr/lib/x86_64-linux-gnu ../.libs/libmesh_dbg.so -L/opt/moose/petsc/mpich_petsc-3.7.4/clang-opt-superlu/lib -L/opt/moose/mpich/mpich-3.2/clang-opt/lib -L/opt/moose/gcc-6.2.0/lib64 -L/opt/moose/gcc-6.2.0/lib /home/lindsayad/test_multiple_petsc/libmesh/build/contrib/netcdf/v4/liblib/.libs/libnetcdf.so /usr/lib/x86_64-linux-gnu/libcurl-gnutls.so -lz -L/opt/moose/tbb/lib -ltbb -ltbbmalloc -lpetsc -lsuperlu_dist -lcmumps -ldmumps -lsmumps -lzmumps -lmumps_common -lpord -lparmetis -lmetis -lHYPRE -L/opt/moose/gcc-6.2.0/lib/gcc/x86_64-pc-linux-gnu/6.2.0 -L/lib/x86_64-linux-gnu -L/opt/moose/llvm-3.9.0/lib -lscalapack -lflapack -lfblas -lX11 -lhwloc /opt/moose/mpich/mpich-3.2/clang-opt/lib/libmpifort.so /opt/moose/gcc-6.2.0/lib/../lib64/libgfortran.so /opt/moose/gcc-6.2.0/lib/../lib64/libgomp.so /opt/moose/gcc-6.2.0/lib/../lib64/libquadmath.so /opt/moose/mpich/mpich-3.2/clang-opt/lib/libmpicxx.so /opt/moose/gcc-6.2.0/lib/../lib64/libstdc++.so -lm /opt/moose/mpich/mpich-3.2/clang-opt/lib/libmpi.so -lrt -lomp -lgcc_s -lpthread -L/usr/lib/x86_64-linux-gnu -L/opt/moose/cppunit-1.12.1/clang-opt/lib -lcppunit -ldl -pthread -fopenmp -Wl,-rpath -Wl,/home/lindsayad/test_multiple_petsc/scripts/../libmesh/installed/lib -Wl,-rpath -Wl,/opt/moose/gcc-6.2.0/lib/../lib64 -Wl,-rpath -Wl,/opt/moose/mpich/mpich-3.2/clang-opt/lib
libtool: link:
ccache clang++ -std=gnu++11 -O0 -felide-constructors -g -pedantic -W -Wall -Wextra -Wno-long-long -Wunused -Wpointer-arith -Wformat -Wparentheses -Qunused-arguments -Woverloaded-virtual -fopenmp -std=gnu++11 -o .libs/unit_tests-dbg
unit_tests_dbg-driver.o
########################################
chunk 1
########################################
base/unit_tests_dbg-default_coupling_test.o base/unit_tests_dbg-getpot_test.o base/unit_tests_dbg-point_neighbor_coupling_test.o base/unit_tests_dbg-auto_ptr_test.o
########################################
chunk 2
########################################
fe/unit_tests_dbg-fe_bernstein_test.o fe/unit_tests_dbg-fe_clough_test.o fe/unit_tests_dbg-fe_hermite_test.o fe/unit_tests_dbg-fe_hierarchic_test.o fe/unit_tests_dbg-fe_l2_hierarchic_test.o fe/unit_tests_dbg-fe_l2_lagrange_test.o fe/unit_tests_dbg-fe_lagrange_test.o fe/unit_tests_dbg-fe_monomial_test.o fe/unit_tests_dbg-fe_szabab_test.o fe/unit_tests_dbg-fe_xyz_test.o
########################################
chunk 3
########################################
geom/unit_tests_dbg-node_test.o
geom/unit_tests_dbg-point_test.o
mesh/unit_tests_dbg-all_tri.o
mesh/unit_tests_dbg-boundary_mesh.o
mesh/unit_tests_dbg-boundary_info.o
mesh/unit_tests_dbg-checkpoint.o
mesh/unit_tests_dbg-contains_point.o
mesh/unit_tests_dbg-mixed_dim_mesh_test.o
mesh/unit_tests_dbg-nodal_neighbors.o
mesh/unit_tests_dbg-mesh_extruder.o
mesh/unit_tests_dbg-slit_mesh_test.o
mesh/unit_tests_dbg-spatial_dimension_test.o
mesh/unit_tests_dbg-mesh_function_dfem.o
numerics/unit_tests_dbg-composite_function_test.o
numerics/unit_tests_dbg-coupling_matrix_test.o
numerics/unit_tests_dbg-distributed_vector_test.o
numerics/unit_tests_dbg-eigen_sparse_vector_test.o
numerics/unit_tests_dbg-laspack_vector_test.o
numerics/unit_tests_dbg-parsed_fem_function_test.o
numerics/unit_tests_dbg-parsed_function_test.o
numerics/unit_tests_dbg-petsc_vector_test.o
numerics/unit_tests_dbg-trilinos_epetra_vector_test.o
numerics/unit_tests_dbg-vector_value_test.o
numerics/unit_tests_dbg-type_tensor_test.o
numerics/unit_tests_dbg-dense_matrix_test.o
parallel/unit_tests_dbg-packed_range_test.o
parallel/unit_tests_dbg-parallel_test.o
parallel/unit_tests_dbg-parallel_point_test.o
quadrature/unit_tests_dbg-quadrature_test.o
solvers/unit_tests_dbg-first_order_unsteady_solver_test.o
solvers/unit_tests_dbg-second_order_unsteady_solver_test.o
systems/unit_tests_dbg-equation_systems_test.o
systems/unit_tests_dbg-systems_test.o
utils/unit_tests_dbg-point_locator_test.o
utils/unit_tests_dbg-vectormap_test.o
fparser/unit_tests_dbg-autodiff.o
-Wl,-rpath
-Wl,/opt/moose/tbb/lib
-Wl,-rpath
-Wl,/opt/moose/petsc/mpich_petsc-3.7.4/clang-opt-superlu/lib
-Wl,-rpath
-Wl,/opt/moose/gcc-6.2.0/lib/gcc/x86_64-pc-linux-gnu/6.2.0
-Wl,-rpath
-Wl,/opt/moose/gcc-6.2.0/lib64
-Wl,-rpath
-Wl,/lib/x86_64-linux-gnu
-Wl,-rpath
-Wl,/opt/moose/gcc-6.2.0/lib
-Wl,-rpath
-Wl,/opt/moose/mpich/mpich-3.2/clang-opt/lib
-Wl,-rpath
-Wl,/opt/moose/llvm-3.9.0/lib
-Wl,-rpath
-Wl,/usr/lib/x86_64-linux-gnu ../.libs/libmesh_dbg.so
-L/opt/moose/petsc/mpich_petsc-3.7.4/clang-opt-superlu/lib
-L/opt/moose/mpich/mpich-3.2/clang-opt/lib
-L/opt/moose/gcc-6.2.0/lib64
-L/opt/moose/gcc-6.2.0/lib /home/lindsayad/test_multiple_petsc/libmesh/build/contrib/netcdf/v4/liblib/.libs/libnetcdf.so /usr/lib/x86_64-linux-gnu/libcurl-gnutls.so
-lz
-L/opt/moose/tbb/lib
-ltbb
-ltbbmalloc
-lpetsc
-lsuperlu_dist
-lcmumps
-ldmumps
-lsmumps
-lzmumps
-lmumps_common
-lpord
-lparmetis
-lmetis
-lHYPRE
-L/opt/moose/gcc-6.2.0/lib/gcc/x86_64-pc-linux-gnu/6.2.0
-L/lib/x86_64-linux-gnu
-L/opt/moose/llvm-3.9.0/lib
-lscalapack
-lflapack
-lfblas
-lX11
-lhwloc /opt/moose/mpich/mpich-3.2/clang-opt/lib/libmpifort.so /opt/moose/gcc-6.2.0/lib/../lib64/libgfortran.so /opt/moose/gcc-6.2.0/lib/../lib64/libgomp.so /opt/moose/gcc-6.2.0/lib/../lib64/libquadmath.so /opt/moose/mpich/mpich-3.2/clang-opt/lib/libmpicxx.so /opt/moose/gcc-6.2.0/lib/../lib64/libstdc++.so
-lm /opt/moose/mpich/mpich-3.2/clang-opt/lib/libmpi.so
-lrt
-lomp
-lgcc_s
-lpthread
-L/usr/lib/x86_64-linux-gnu
-L/opt/moose/cppunit-1.12.1/clang-opt/lib
-lcppunit
-ldl
-pthread
-fopenmp
-Wl,-rpath
-Wl,/home/lindsayad/test_multiple_petsc/scripts/../libmesh/installed/lib
-Wl,-rpath
-Wl,/opt/moose/gcc-6.2.0/lib/../lib64
-Wl,-rpath
-Wl,/opt/moose/mpich/mpich-3.2/clang-opt/lib
##########################################################
beginning piece:
############################################################
ccache clang++ -std=gnu++11 -O0 -felide-constructors -g -pedantic -W -Wall -Wextra -Wno-long-long -Wunused -Wpointer-arith -Wformat -Wparentheses -Qunused-arguments -Woverloaded-virtual -fopenmp -std=gnu++11 -o .libs/unit_tests-dbg unit_tests_dbg-driver.o
##############################################
ending piece:
#############################################
-Wl,-rpath -Wl,/opt/moose/tbb/lib -Wl,-rpath -Wl,/opt/moose/petsc/mpich_petsc-3.7.4/clang-opt-superlu/lib -Wl,-rpath -Wl,/opt/moose/gcc-6.2.0/lib/gcc/x86_64-pc-linux-gnu/6.2.0 -Wl,-rpath -Wl,/opt/moose/gcc-6.2.0/lib64 -Wl,-rpath -Wl,/lib/x86_64-linux-gnu -Wl,-rpath -Wl,/opt/moose/gcc-6.2.0/lib -Wl,-rpath -Wl,/opt/moose/mpich/mpich-3.2/clang-opt/lib -Wl,-rpath -Wl,/opt/moose/llvm-3.9.0/lib -Wl,-rpath -Wl,/usr/lib/x86_64-linux-gnu ../.libs/libmesh_dbg.so -L/opt/moose/petsc/mpich_petsc-3.7.4/clang-opt-superlu/lib -L/opt/moose/mpich/mpich-3.2/clang-opt/lib -L/opt/moose/gcc-6.2.0/lib64 -L/opt/moose/gcc-6.2.0/lib /home/lindsayad/test_multiple_petsc/libmesh/build/contrib/netcdf/v4/liblib/.libs/libnetcdf.so /usr/lib/x86_64-linux-gnu/libcurl-gnutls.so -lz -L/opt/moose/tbb/lib -ltbb -ltbbmalloc -lpetsc -lsuperlu_dist -lcmumps -ldmumps -lsmumps -lzmumps -lmumps_common -lpord -lparmetis -lmetis -lHYPRE -L/opt/moose/gcc-6.2.0/lib/gcc/x86_64-pc-linux-gnu/6.2.0 -L/lib/x86_64-linux-gnu -L/opt/moose/llvm-3.9.0/lib -lscalapack -lflapack -lfblas -lX11 -lhwloc /opt/moose/mpich/mpich-3.2/clang-opt/lib/libmpifort.so /opt/moose/gcc-6.2.0/lib/../lib64/libgfortran.so /opt/moose/gcc-6.2.0/lib/../lib64/libgomp.so /opt/moose/gcc-6.2.0/lib/../lib64/libquadmath.so /opt/moose/mpich/mpich-3.2/clang-opt/lib/libmpicxx.so /opt/moose/gcc-6.2.0/lib/../lib64/libstdc++.so -lm /opt/moose/mpich/mpich-3.2/clang-opt/lib/libmpi.so -lrt -lomp -lgcc_s -lpthread -L/usr/lib/x86_64-linux-gnu -L/opt/moose/cppunit-1.12.1/clang-opt/lib -lcppunit -ldl -pthread -fopenmp -Wl,-rpath -Wl,/home/lindsayad/test_multiple_petsc/scripts/../libmesh/installed/lib -Wl,-rpath -Wl,/opt/moose/gcc-6.2.0/lib/../lib64 -Wl,-rpath -Wl,/opt/moose/mpich/mpich-3.2/clang-opt/lib
##############################################
ending piece without libmesh_dbg.so:
#############################################
-Wl,-rpath -Wl,/opt/moose/tbb/lib -Wl,-rpath -Wl,/opt/moose/petsc/mpich_petsc-3.7.4/clang-opt-superlu/lib -Wl,-rpath -Wl,/opt/moose/gcc-6.2.0/lib/gcc/x86_64-pc-linux-gnu/6.2.0 -Wl,-rpath -Wl,/opt/moose/gcc-6.2.0/lib64 -Wl,-rpath -Wl,/lib/x86_64-linux-gnu -Wl,-rpath -Wl,/opt/moose/gcc-6.2.0/lib -Wl,-rpath -Wl,/opt/moose/mpich/mpich-3.2/clang-opt/lib -Wl,-rpath -Wl,/opt/moose/llvm-3.9.0/lib -Wl,-rpath -Wl,/usr/lib/x86_64-linux-gnu -L/opt/moose/petsc/mpich_petsc-3.7.4/clang-opt-superlu/lib -L/opt/moose/mpich/mpich-3.2/clang-opt/lib -L/opt/moose/gcc-6.2.0/lib64 -L/opt/moose/gcc-6.2.0/lib /home/lindsayad/test_multiple_petsc/libmesh/build/contrib/netcdf/v4/liblib/.libs/libnetcdf.so /usr/lib/x86_64-linux-gnu/libcurl-gnutls.so -lz -L/opt/moose/tbb/lib -ltbb -ltbbmalloc -lpetsc -lsuperlu_dist -lcmumps -ldmumps -lsmumps -lzmumps -lmumps_common -lpord -lparmetis -lmetis -lHYPRE -L/opt/moose/gcc-6.2.0/lib/gcc/x86_64-pc-linux-gnu/6.2.0 -L/lib/x86_64-linux-gnu -L/opt/moose/llvm-3.9.0/lib -lscalapack -lflapack -lfblas -lX11 -lhwloc /opt/moose/mpich/mpich-3.2/clang-opt/lib/libmpifort.so /opt/moose/gcc-6.2.0/lib/../lib64/libgfortran.so /opt/moose/gcc-6.2.0/lib/../lib64/libgomp.so /opt/moose/gcc-6.2.0/lib/../lib64/libquadmath.so /opt/moose/mpich/mpich-3.2/clang-opt/lib/libmpicxx.so /opt/moose/gcc-6.2.0/lib/../lib64/libstdc++.so -lm /opt/moose/mpich/mpich-3.2/clang-opt/lib/libmpi.so -lrt -lomp -lgcc_s -lpthread -L/usr/lib/x86_64-linux-gnu -L/opt/moose/cppunit-1.12.1/clang-opt/lib -lcppunit -ldl -pthread -fopenmp -Wl,-rpath -Wl,/home/lindsayad/test_multiple_petsc/scripts/../libmesh/installed/lib -Wl,-rpath -Wl,/opt/moose/gcc-6.2.0/lib/../lib64 -Wl,-rpath -Wl,/opt/moose/mpich/mpich-3.2/clang-opt/lib
####################################################################################################
Winning command to compile libmesh_dbg after swapping /usr/lib/x86_64-linux-gnu behind the /opt petsc directory:
####################################################################################################
ccache clang++ -fPIC -DPIC -shared -nostdlib /usr/lib/x86_64-linux-gnu/crti.o /opt/moose/gcc-6.2.0/lib/gcc/x86_64-pc-linux-gnu/6.2.0/crtbeginS.o src/base/.libs/libmesh_dbg_la-default_coupling.o src/base/.libs/libmesh_dbg_la-dirichlet_boundary.o src/base/.libs/libmesh_dbg_la-dof_map.o src/base/.libs/libmesh_dbg_la-dof_map_constraints.o src/base/.libs/libmesh_dbg_la-dof_object.o src/base/.libs/libmesh_dbg_la-ghost_point_neighbors.o src/base/.libs/libmesh_dbg_la-libmesh.o src/base/.libs/libmesh_dbg_la-libmesh_common.o src/base/.libs/libmesh_dbg_la-libmesh_isnan.o src/base/.libs/libmesh_dbg_la-libmesh_singleton.o src/base/.libs/libmesh_dbg_la-libmesh_version.o src/base/.libs/libmesh_dbg_la-periodic_boundaries.o src/base/.libs/libmesh_dbg_la-periodic_boundary.o src/base/.libs/libmesh_dbg_la-periodic_boundary_base.o src/base/.libs/libmesh_dbg_la-point_neighbor_coupling.o src/base/.libs/libmesh_dbg_la-print_trace.o src/base/.libs/libmesh_dbg_la-reference_counted_object.o src/base/.libs/libmesh_dbg_la-reference_counter.o src/base/.libs/libmesh_dbg_la-sibling_coupling.o src/base/.libs/libmesh_dbg_la-single_predicates.o src/base/.libs/libmesh_dbg_la-sparsity_pattern.o src/error_estimation/.libs/libmesh_dbg_la-adjoint_refinement_estimator.o src/error_estimation/.libs/libmesh_dbg_la-adjoint_residual_error_estimator.o src/error_estimation/.libs/libmesh_dbg_la-discontinuity_measure.o src/error_estimation/.libs/libmesh_dbg_la-error_estimator.o src/error_estimation/.libs/libmesh_dbg_la-exact_error_estimator.o src/error_estimation/.libs/libmesh_dbg_la-exact_solution.o src/error_estimation/.libs/libmesh_dbg_la-fourth_error_estimators.o src/error_estimation/.libs/libmesh_dbg_la-hp_coarsentest.o src/error_estimation/.libs/libmesh_dbg_la-hp_selector.o src/error_estimation/.libs/libmesh_dbg_la-hp_singular.o src/error_estimation/.libs/libmesh_dbg_la-jump_error_estimator.o src/error_estimation/.libs/libmesh_dbg_la-kelly_error_estimator.o src/error_estimation/.libs/libmesh_dbg_la-patch_recovery_error_estimator.o src/error_estimation/.libs/libmesh_dbg_la-uniform_refinement_estimator.o src/error_estimation/.libs/libmesh_dbg_la-weighted_patch_recovery_estimator.o src/fe/.libs/libmesh_dbg_la-fe.o src/fe/.libs/libmesh_dbg_la-fe_abstract.o src/fe/.libs/libmesh_dbg_la-fe_base.o src/fe/.libs/libmesh_dbg_la-fe_bernstein.o src/fe/.libs/libmesh_dbg_la-fe_bernstein_shape_0D.o src/fe/.libs/libmesh_dbg_la-fe_bernstein_shape_1D.o src/fe/.libs/libmesh_dbg_la-fe_bernstein_shape_2D.o src/fe/.libs/libmesh_dbg_la-fe_bernstein_shape_3D.o src/fe/.libs/libmesh_dbg_la-fe_boundary.o src/fe/.libs/libmesh_dbg_la-fe_clough.o src/fe/.libs/libmesh_dbg_la-fe_clough_shape_0D.o src/fe/.libs/libmesh_dbg_la-fe_clough_shape_1D.o src/fe/.libs/libmesh_dbg_la-fe_clough_shape_2D.o src/fe/.libs/libmesh_dbg_la-fe_clough_shape_3D.o src/fe/.libs/libmesh_dbg_la-fe_compute_data.o src/fe/.libs/libmesh_dbg_la-fe_hermite.o 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src/mesh/.libs/libmesh_dbg_la-checkpoint_io.o src/mesh/.libs/libmesh_dbg_la-distributed_mesh.o src/mesh/.libs/libmesh_dbg_la-ensight_io.o src/mesh/.libs/libmesh_dbg_la-exodusII_io.o src/mesh/.libs/libmesh_dbg_la-exodusII_io_helper.o src/mesh/.libs/libmesh_dbg_la-fro_io.o src/mesh/.libs/libmesh_dbg_la-gmsh_io.o src/mesh/.libs/libmesh_dbg_la-gmv_io.o src/mesh/.libs/libmesh_dbg_la-gnuplot_io.o src/mesh/.libs/libmesh_dbg_la-inf_elem_builder.o src/mesh/.libs/libmesh_dbg_la-matlab_io.o src/mesh/.libs/libmesh_dbg_la-medit_io.o src/mesh/.libs/libmesh_dbg_la-mesh_base.o src/mesh/.libs/libmesh_dbg_la-mesh_communication.o src/mesh/.libs/libmesh_dbg_la-mesh_communication_global_indices.o src/mesh/.libs/libmesh_dbg_la-mesh_data.o src/mesh/.libs/libmesh_dbg_la-mesh_data_tetgen_support.o src/mesh/.libs/libmesh_dbg_la-mesh_data_unv_support.o src/mesh/.libs/libmesh_dbg_la-mesh_data_xdr_support.o src/mesh/.libs/libmesh_dbg_la-mesh_function.o src/mesh/.libs/libmesh_dbg_la-mesh_generation.o 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src/mesh/.libs/libmesh_dbg_la-nemesis_io_helper.o src/mesh/.libs/libmesh_dbg_la-off_io.o src/mesh/.libs/libmesh_dbg_la-patch.o src/mesh/.libs/libmesh_dbg_la-postscript_io.o src/mesh/.libs/libmesh_dbg_la-replicated_mesh.o src/mesh/.libs/libmesh_dbg_la-tecplot_io.o src/mesh/.libs/libmesh_dbg_la-tetgen_io.o src/mesh/.libs/libmesh_dbg_la-ucd_io.o src/mesh/.libs/libmesh_dbg_la-unstructured_mesh.o src/mesh/.libs/libmesh_dbg_la-unv_io.o src/mesh/.libs/libmesh_dbg_la-vtk_io.o src/mesh/.libs/libmesh_dbg_la-xdr_io.o src/numerics/.libs/libmesh_dbg_la-analytic_function.o src/numerics/.libs/libmesh_dbg_la-coupling_matrix.o src/numerics/.libs/libmesh_dbg_la-dense_matrix.o src/numerics/.libs/libmesh_dbg_la-dense_matrix_base.o src/numerics/.libs/libmesh_dbg_la-dense_matrix_blas_lapack.o src/numerics/.libs/libmesh_dbg_la-dense_submatrix.o src/numerics/.libs/libmesh_dbg_la-dense_subvector.o src/numerics/.libs/libmesh_dbg_la-dense_vector.o src/numerics/.libs/libmesh_dbg_la-dense_vector_base.o src/numerics/.libs/libmesh_dbg_la-distributed_vector.o src/numerics/.libs/libmesh_dbg_la-eigen_preconditioner.o src/numerics/.libs/libmesh_dbg_la-eigen_sparse_matrix.o src/numerics/.libs/libmesh_dbg_la-eigen_sparse_vector.o src/numerics/.libs/libmesh_dbg_la-function_base.o src/numerics/.libs/libmesh_dbg_la-laspack_matrix.o src/numerics/.libs/libmesh_dbg_la-laspack_vector.o src/numerics/.libs/libmesh_dbg_la-numeric_vector.o src/numerics/.libs/libmesh_dbg_la-petsc_matrix.o src/numerics/.libs/libmesh_dbg_la-petsc_preconditioner.o src/numerics/.libs/libmesh_dbg_la-petsc_vector.o src/numerics/.libs/libmesh_dbg_la-preconditioner.o src/numerics/.libs/libmesh_dbg_la-sparse_matrix.o src/numerics/.libs/libmesh_dbg_la-sparse_shell_matrix.o src/numerics/.libs/libmesh_dbg_la-sum_shell_matrix.o src/numerics/.libs/libmesh_dbg_la-tensor_shell_matrix.o src/numerics/.libs/libmesh_dbg_la-tensor_tools.o src/numerics/.libs/libmesh_dbg_la-trilinos_epetra_matrix.o src/numerics/.libs/libmesh_dbg_la-trilinos_epetra_vector.o src/numerics/.libs/libmesh_dbg_la-trilinos_preconditioner.o src/numerics/.libs/libmesh_dbg_la-type_tensor.o src/numerics/.libs/libmesh_dbg_la-type_vector.o src/parallel/.libs/libmesh_dbg_la-parallel_bin_sorter.o src/parallel/.libs/libmesh_dbg_la-parallel_elem.o src/parallel/.libs/libmesh_dbg_la-parallel_ghost_sync.o src/parallel/.libs/libmesh_dbg_la-parallel_histogram.o src/parallel/.libs/libmesh_dbg_la-parallel_node.o src/parallel/.libs/libmesh_dbg_la-parallel_sort.o src/parallel/.libs/libmesh_dbg_la-threads.o src/partitioning/.libs/libmesh_dbg_la-centroid_partitioner.o src/partitioning/.libs/libmesh_dbg_la-linear_partitioner.o src/partitioning/.libs/libmesh_dbg_la-metis_partitioner.o src/partitioning/.libs/libmesh_dbg_la-parmetis_partitioner.o src/partitioning/.libs/libmesh_dbg_la-partitioner.o src/partitioning/.libs/libmesh_dbg_la-partitioner_factory.o src/partitioning/.libs/libmesh_dbg_la-sfc_partitioner.o src/physics/.libs/libmesh_dbg_la-diff_physics.o src/physics/.libs/libmesh_dbg_la-diff_qoi.o src/physics/.libs/libmesh_dbg_la-fem_physics.o src/quadrature/.libs/libmesh_dbg_la-quadrature.o src/quadrature/.libs/libmesh_dbg_la-quadrature_build.o src/quadrature/.libs/libmesh_dbg_la-quadrature_clough.o src/quadrature/.libs/libmesh_dbg_la-quadrature_clough_1D.o src/quadrature/.libs/libmesh_dbg_la-quadrature_clough_2D.o src/quadrature/.libs/libmesh_dbg_la-quadrature_clough_3D.o src/quadrature/.libs/libmesh_dbg_la-quadrature_composite.o src/quadrature/.libs/libmesh_dbg_la-quadrature_conical.o src/quadrature/.libs/libmesh_dbg_la-quadrature_conical_2D.o src/quadrature/.libs/libmesh_dbg_la-quadrature_conical_3D.o src/quadrature/.libs/libmesh_dbg_la-quadrature_gauss.o src/quadrature/.libs/libmesh_dbg_la-quadrature_gauss_1D.o src/quadrature/.libs/libmesh_dbg_la-quadrature_gauss_2D.o src/quadrature/.libs/libmesh_dbg_la-quadrature_gauss_3D.o 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src/solution_transfer/.libs/libmesh_dbg_la-dtk_adapter.o src/solution_transfer/.libs/libmesh_dbg_la-dtk_evaluator.o src/solution_transfer/.libs/libmesh_dbg_la-dtk_solution_transfer.o src/solution_transfer/.libs/libmesh_dbg_la-meshfree_interpolation.o src/solution_transfer/.libs/libmesh_dbg_la-meshfree_solution_transfer.o src/solution_transfer/.libs/libmesh_dbg_la-meshfunction_solution_transfer.o src/solution_transfer/.libs/libmesh_dbg_la-radial_basis_interpolation.o src/solution_transfer/.libs/libmesh_dbg_la-solution_transfer.o src/solvers/.libs/libmesh_dbg_la-adaptive_time_solver.o src/solvers/.libs/libmesh_dbg_la-diff_solver.o src/solvers/.libs/libmesh_dbg_la-eigen_solver.o src/solvers/.libs/libmesh_dbg_la-eigen_sparse_linear_solver.o src/solvers/.libs/libmesh_dbg_la-eigen_time_solver.o src/solvers/.libs/libmesh_dbg_la-euler2_solver.o src/solvers/.libs/libmesh_dbg_la-euler_solver.o src/solvers/.libs/libmesh_dbg_la-laspack_linear_solver.o src/solvers/.libs/libmesh_dbg_la-linear_solver.o src/solvers/.libs/libmesh_dbg_la-memory_solution_history.o src/solvers/.libs/libmesh_dbg_la-newmark_solver.o src/solvers/.libs/libmesh_dbg_la-newton_solver.o src/solvers/.libs/libmesh_dbg_la-nlopt_optimization_solver.o src/solvers/.libs/libmesh_dbg_la-no_solution_history.o src/solvers/.libs/libmesh_dbg_la-nonlinear_solver.o src/solvers/.libs/libmesh_dbg_la-optimization_solver.o src/solvers/.libs/libmesh_dbg_la-petsc_auto_fieldsplit.o src/solvers/.libs/libmesh_dbg_la-petsc_diff_solver.o src/solvers/.libs/libmesh_dbg_la-petsc_linear_solver.o src/solvers/.libs/libmesh_dbg_la-petsc_nonlinear_solver.o src/solvers/.libs/libmesh_dbg_la-petscdmlibmesh.o src/solvers/.libs/libmesh_dbg_la-petscdmlibmeshimpl.o src/solvers/.libs/libmesh_dbg_la-second_order_unsteady_solver.o src/solvers/.libs/libmesh_dbg_la-slepc_eigen_solver.o src/solvers/.libs/libmesh_dbg_la-steady_solver.o src/solvers/.libs/libmesh_dbg_la-tao_optimization_solver.o src/solvers/.libs/libmesh_dbg_la-time_solver.o src/solvers/.libs/libmesh_dbg_la-trilinos_aztec_linear_solver.o src/solvers/.libs/libmesh_dbg_la-trilinos_nox_nonlinear_solver.o src/solvers/.libs/libmesh_dbg_la-twostep_time_solver.o src/solvers/.libs/libmesh_dbg_la-unsteady_solver.o src/systems/.libs/libmesh_dbg_la-condensed_eigen_system.o src/systems/.libs/libmesh_dbg_la-continuation_system.o src/systems/.libs/libmesh_dbg_la-dg_fem_context.o src/systems/.libs/libmesh_dbg_la-diff_context.o src/systems/.libs/libmesh_dbg_la-diff_system.o src/systems/.libs/libmesh_dbg_la-eigen_system.o src/systems/.libs/libmesh_dbg_la-equation_systems.o src/systems/.libs/libmesh_dbg_la-equation_systems_io.o src/systems/.libs/libmesh_dbg_la-explicit_system.o src/systems/.libs/libmesh_dbg_la-fem_context.o src/systems/.libs/libmesh_dbg_la-fem_system.o src/systems/.libs/libmesh_dbg_la-frequency_system.o src/systems/.libs/libmesh_dbg_la-implicit_system.o src/systems/.libs/libmesh_dbg_la-linear_implicit_system.o src/systems/.libs/libmesh_dbg_la-newmark_system.o src/systems/.libs/libmesh_dbg_la-nonlinear_implicit_system.o src/systems/.libs/libmesh_dbg_la-optimization_system.o src/systems/.libs/libmesh_dbg_la-parameter_vector.o src/systems/.libs/libmesh_dbg_la-qoi_set.o src/systems/.libs/libmesh_dbg_la-steady_system.o src/systems/.libs/libmesh_dbg_la-system.o src/systems/.libs/libmesh_dbg_la-system_io.o src/systems/.libs/libmesh_dbg_la-system_projection.o src/systems/.libs/libmesh_dbg_la-system_subset.o src/systems/.libs/libmesh_dbg_la-system_subset_by_subdomain.o src/systems/.libs/libmesh_dbg_la-transient_system.o src/utils/.libs/libmesh_dbg_la-error_vector.o src/utils/.libs/libmesh_dbg_la-hashword.o src/utils/.libs/libmesh_dbg_la-location_maps.o src/utils/.libs/libmesh_dbg_la-number_lookups.o src/utils/.libs/libmesh_dbg_la-perf_log.o src/utils/.libs/libmesh_dbg_la-plt_loader.o src/utils/.libs/libmesh_dbg_la-plt_loader_read.o src/utils/.libs/libmesh_dbg_la-plt_loader_write.o src/utils/.libs/libmesh_dbg_la-point_locator_base.o src/utils/.libs/libmesh_dbg_la-point_locator_tree.o src/utils/.libs/libmesh_dbg_la-statistics.o src/utils/.libs/libmesh_dbg_la-string_to_enum.o src/utils/.libs/libmesh_dbg_la-timestamp.o src/utils/.libs/libmesh_dbg_la-topology_map.o src/utils/.libs/libmesh_dbg_la-tree.o src/utils/.libs/libmesh_dbg_la-tree_node.o src/utils/.libs/libmesh_dbg_la-utility.o src/utils/.libs/libmesh_dbg_la-xdr_cxx.o -Wl,--whole-archive contrib/.libs/libcontrib_dbg.a -Wl,--no-whole-archive -Wl,-rpath -Wl,/home/lindsayad/test_multiple_petsc/libmesh/build/contrib/netcdf/v4/liblib/.libs -Wl,-rpath -Wl,/opt/moose/gcc-6.2.0/lib/../lib64 -Wl,-rpath -Wl,/opt/moose/mpich/mpich-3.2/clang-opt/lib -Wl,-rpath -Wl,/home/lindsayad/test_multiple_petsc/scripts/../libmesh/installed/lib -Wl,-rpath -Wl,/opt/moose/gcc-6.2.0/lib/../lib64 -Wl,-rpath -Wl,/opt/moose/mpich/mpich-3.2/clang-opt/lib /home/lindsayad/test_multiple_petsc/libmesh/build/contrib/netcdf/v4/liblib/.libs/libnetcdf.so -L/opt/moose/tbb/lib -L/opt/moose/petsc/mpich_petsc-3.7.4/clang-opt-superlu/lib -L/opt/moose/mpich/mpich-3.2/clang-opt/lib -L/opt/moose/gcc-6.2.0/lib/gcc/x86_64-pc-linux-gnu/6.2.0 -L/opt/moose/gcc-6.2.0/lib64 -L/lib/x86_64-linux-gnu -L/opt/moose/gcc-6.2.0/lib -L/opt/moose/llvm-3.9.0/lib -L/usr/lib/x86_64-linux-gnu /usr/lib/x86_64-linux-gnu/libcurl-gnutls.so -lz -ltbb -ltbbmalloc -lpetsc -lsuperlu_dist -lcmumps -ldmumps -lsmumps -lzmumps -lmumps_common -lpord -lparmetis -lmetis -lHYPRE -lscalapack -lflapack -lfblas -lX11 -lhwloc /opt/moose/mpich/mpich-3.2/clang-opt/lib/libmpifort.so -L/opt/moose/gcc-6.2.0/lib/../lib64 /opt/moose/gcc-6.2.0/lib/../lib64/libgfortran.so /opt/moose/gcc-6.2.0/lib/../lib64/libgomp.so /opt/moose/gcc-6.2.0/lib/../lib64/libquadmath.so /opt/moose/mpich/mpich-3.2/clang-opt/lib/libmpicxx.so /opt/moose/mpich/mpich-3.2/clang-opt/lib/libmpi.so -lrt -lomp -lpthread -ldl -L/opt/moose/gcc-6.2.0/lib/gcc/x86_64-pc-linux-gnu/6.2.0/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/opt/moose/gcc-6.2.0/lib/gcc/x86_64-pc-linux-gnu/6.2.0/../../.. -L/opt/moose/llvm-3.9.0/bin/../lib -L/lib -L/usr/lib /opt/moose/gcc-6.2.0/lib/../lib64/libstdc++.so -lm -lc -lgcc_s /opt/moose/gcc-6.2.0/lib/gcc/x86_64-pc-linux-gnu/6.2.0/crtendS.o /usr/lib/x86_64-linux-gnu/crtn.o -O0 -g -fopenmp -Wl,-rpath -Wl,/opt/moose/tbb/lib -Wl,-rpath -Wl,/opt/moose/petsc/mpich_petsc-3.7.4/clang-opt-superlu/lib -Wl,-rpath -Wl,/opt/moose/gcc-6.2.0/lib/gcc/x86_64-pc-linux-gnu/6.2.0 -Wl,-rpath -Wl,/opt/moose/gcc-6.2.0/lib64 -Wl,-rpath -Wl,/lib/x86_64-linux-gnu -Wl,-rpath -Wl,/opt/moose/gcc-6.2.0/lib -Wl,-rpath -Wl,/opt/moose/mpich/mpich-3.2/clang-opt/lib -Wl,-rpath -Wl,/opt/moose/llvm-3.9.0/lib -Wl,-rpath -Wl,/usr/lib/x86_64-linux-gnu -Wl,-rpath -Wl,/opt/moose/tbb/lib -Wl,-rpath -Wl,/opt/moose/petsc/mpich_petsc-3.7.4/clang-opt-superlu/lib -Wl,-rpath -Wl,/opt/moose/gcc-6.2.0/lib/gcc/x86_64-pc-linux-gnu/6.2.0 -Wl,-rpath -Wl,/opt/moose/gcc-6.2.0/lib64 -Wl,-rpath -Wl,/lib/x86_64-linux-gnu -Wl,-rpath -Wl,/opt/moose/gcc-6.2.0/lib -Wl,-rpath -Wl,/opt/moose/mpich/mpich-3.2/clang-opt/lib -Wl,-rpath -Wl,/opt/moose/llvm-3.9.0/lib -Wl,-rpath -Wl,/usr/lib/x86_64-linux-gnu -fopenmp -pthread -Wl,-soname -Wl,libmesh_dbg.so.0 -o .libs/libmesh_dbg.so.0.0.0
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Winning command to compile unit_tests-dbg after compiling libmesh_dbg:
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ccache clang++ -std=gnu++11 -O0 -felide-constructors -g -pedantic -W -Wall -Wextra -Wno-long-long -Wunused -Wpointer-arith -Wformat -Wparentheses -Qunused-arguments -Woverloaded-virtual -fopenmp -std=gnu++11 -o .libs/unit_tests-dbg unit_tests_dbg-driver.o base/unit_tests_dbg-default_coupling_test.o base/unit_tests_dbg-getpot_test.o base/unit_tests_dbg-point_neighbor_coupling_test.o base/unit_tests_dbg-auto_ptr_test.o fe/unit_tests_dbg-fe_bernstein_test.o fe/unit_tests_dbg-fe_clough_test.o fe/unit_tests_dbg-fe_hermite_test.o fe/unit_tests_dbg-fe_hierarchic_test.o fe/unit_tests_dbg-fe_l2_hierarchic_test.o fe/unit_tests_dbg-fe_l2_lagrange_test.o fe/unit_tests_dbg-fe_lagrange_test.o fe/unit_tests_dbg-fe_monomial_test.o fe/unit_tests_dbg-fe_szabab_test.o fe/unit_tests_dbg-fe_xyz_test.o geom/unit_tests_dbg-node_test.o geom/unit_tests_dbg-point_test.o mesh/unit_tests_dbg-all_tri.o mesh/unit_tests_dbg-boundary_mesh.o mesh/unit_tests_dbg-boundary_info.o mesh/unit_tests_dbg-checkpoint.o mesh/unit_tests_dbg-contains_point.o mesh/unit_tests_dbg-mixed_dim_mesh_test.o mesh/unit_tests_dbg-nodal_neighbors.o mesh/unit_tests_dbg-mesh_extruder.o mesh/unit_tests_dbg-slit_mesh_test.o mesh/unit_tests_dbg-spatial_dimension_test.o mesh/unit_tests_dbg-mesh_function_dfem.o numerics/unit_tests_dbg-composite_function_test.o numerics/unit_tests_dbg-coupling_matrix_test.o numerics/unit_tests_dbg-distributed_vector_test.o numerics/unit_tests_dbg-eigen_sparse_vector_test.o numerics/unit_tests_dbg-laspack_vector_test.o numerics/unit_tests_dbg-parsed_fem_function_test.o numerics/unit_tests_dbg-parsed_function_test.o numerics/unit_tests_dbg-petsc_vector_test.o numerics/unit_tests_dbg-trilinos_epetra_vector_test.o numerics/unit_tests_dbg-vector_value_test.o numerics/unit_tests_dbg-type_tensor_test.o numerics/unit_tests_dbg-dense_matrix_test.o parallel/unit_tests_dbg-packed_range_test.o parallel/unit_tests_dbg-parallel_test.o parallel/unit_tests_dbg-parallel_point_test.o quadrature/unit_tests_dbg-quadrature_test.o solvers/unit_tests_dbg-first_order_unsteady_solver_test.o solvers/unit_tests_dbg-second_order_unsteady_solver_test.o systems/unit_tests_dbg-equation_systems_test.o systems/unit_tests_dbg-systems_test.o utils/unit_tests_dbg-point_locator_test.o utils/unit_tests_dbg-vectormap_test.o fparser/unit_tests_dbg-autodiff.o -Wl,-rpath -Wl,/opt/moose/tbb/lib -Wl,-rpath -Wl,/opt/moose/petsc/mpich_petsc-3.7.4/clang-opt-superlu/lib -Wl,-rpath -Wl,/opt/moose/gcc-6.2.0/lib/gcc/x86_64-pc-linux-gnu/6.2.0 -Wl,-rpath -Wl,/opt/moose/gcc-6.2.0/lib64 -Wl,-rpath -Wl,/lib/x86_64-linux-gnu -Wl,-rpath -Wl,/opt/moose/gcc-6.2.0/lib -Wl,-rpath -Wl,/opt/moose/mpich/mpich-3.2/clang-opt/lib -Wl,-rpath -Wl,/opt/moose/llvm-3.9.0/lib -Wl,-rpath -Wl,/usr/lib/x86_64-linux-gnu ../.libs/libmesh_dbg.so -L/opt/moose/petsc/mpich_petsc-3.7.4/clang-opt-superlu/lib -L/opt/moose/mpich/mpich-3.2/clang-opt/lib -L/opt/moose/gcc-6.2.0/lib64 -L/opt/moose/gcc-6.2.0/lib /home/lindsayad/test_multiple_petsc/libmesh/build/contrib/netcdf/v4/liblib/.libs/libnetcdf.so /usr/lib/x86_64-linux-gnu/libcurl-gnutls.so -lz -L/opt/moose/tbb/lib -ltbb -ltbbmalloc -lpetsc -lsuperlu_dist -lcmumps -ldmumps -lsmumps -lzmumps -lmumps_common -lpord -lparmetis -lmetis -lHYPRE -L/opt/moose/gcc-6.2.0/lib/gcc/x86_64-pc-linux-gnu/6.2.0 -L/lib/x86_64-linux-gnu -L/opt/moose/llvm-3.9.0/lib -lscalapack -lflapack -lfblas -lX11 -lhwloc /opt/moose/mpich/mpich-3.2/clang-opt/lib/libmpifort.so /opt/moose/gcc-6.2.0/lib/../lib64/libgfortran.so /opt/moose/gcc-6.2.0/lib/../lib64/libgomp.so /opt/moose/gcc-6.2.0/lib/../lib64/libquadmath.so /opt/moose/mpich/mpich-3.2/clang-opt/lib/libmpicxx.so /opt/moose/gcc-6.2.0/lib/../lib64/libstdc++.so -lm /opt/moose/mpich/mpich-3.2/clang-opt/lib/libmpi.so -lrt -lomp -lgcc_s -lpthread -L/usr/lib/x86_64-linux-gnu -L/opt/moose/cppunit-1.12.1/clang-opt/lib -lcppunit -ldl -pthread -fopenmp -Wl,-rpath -Wl,/home/lindsayad/test_multiple_petsc/scripts/../libmesh/installed/lib -Wl,-rpath -Wl,/opt/moose/gcc-6.2.0/lib/../lib64 -Wl,-rpath -Wl,/opt/moose/mpich/mpich-3.2/clang-opt/lib