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HTS-flow (High-Throughput Sequencing flow) provides a framework for the management and analysis of NGS data.

HTS-flow is based on a combination of a MySQL database, a PHP web interface and several NGS analysis modules. It allows labs generating NGS samples to analyze sequencing data and to manage the increasing size of their data repository. HTS-flow facilitates the reproducibility and traceability of the analyses by avoiding manual, error-prone execution of a set of standard NGS tools.

For a full description of HTS-flow and the supported analyses, go to : HTS-flow web page on GitHub

Documentation:

• Data structure
• Installation
• Running the pipelines
• Genomes
• User authentication
• Third party software and libraries