diff --git a/Dockerfile b/Dockerfile index a6104b45..c95c494b 100644 --- a/Dockerfile +++ b/Dockerfile @@ -57,7 +57,6 @@ RUN set -ex \ pbzip2 \ pst-utils \ rsync \ - siegfried \ sleuthkit \ tesseract-ocr \ tree \ diff --git a/a3m/client/clientScripts/a3m_download_transfer.py b/a3m/client/clientScripts/a3m_download_transfer.py index 04888fe9..018a871a 100644 --- a/a3m/client/clientScripts/a3m_download_transfer.py +++ b/a3m/client/clientScripts/a3m_download_transfer.py @@ -1,5 +1,4 @@ """Download transfer object from storage.""" -import json import shutil import sys from contextlib import contextmanager @@ -7,6 +6,7 @@ from tempfile import TemporaryDirectory from urllib.parse import urlparse +import pygfried import requests from django.conf import settings @@ -42,14 +42,7 @@ def _create_tmpdir(suffix, purpose=None): def _archived(path): - command = ["sf", "-json", path] - exit_code, stdout, stderr = executeOrRun("command", command, capture_output=True) - if exit_code != 0: - raise RetrievalError( - f"Extraction failed, Siegfried quit with exit code {exit_code}" - ) - idresults = json.loads(stdout) - puid = idresults["files"][0]["matches"][0]["id"] + puid = pygfried.identify(path) return puid in EXTRACTABLE_PUIDS diff --git a/a3m/client/clientScripts/identify_file_format.py b/a3m/client/clientScripts/identify_file_format.py index 663ebac8..26f18214 100644 --- a/a3m/client/clientScripts/identify_file_format.py +++ b/a3m/client/clientScripts/identify_file_format.py @@ -1,30 +1,44 @@ import argparse +import logging import uuid +import pygfried from django.db import transaction from a3m.databaseFunctions import getUTCDate from a3m.databaseFunctions import insertIntoEvents -from a3m.executeOrRunSubProcess import executeOrRun from a3m.fpr.models import FormatVersion -from a3m.fpr.models import IDCommand -from a3m.fpr.models import IDRule from a3m.main.models import File from a3m.main.models import FileFormatVersion from a3m.main.models import FileID -def write_identification_event(file_uuid, command, format=None, success=True): +logger = logging.getLogger(__name__) + +TOOL_DESCRIPTION = "pygfried/siegfried" +TOOL_VERSION = pygfried.version() + + +def write_file_format_version(file_obj, format_version_obj): + (ffv, created) = FileFormatVersion.objects.get_or_create( + file_uuid=file_obj, defaults={"format_version": format_version_obj} + ) + if not created: # Update the version if it wasn't created new + ffv.format_version = format_version_obj + ffv.save() + + +def write_identification_event(file_uuid, puid=None, success=True): event_detail_text = 'program="{}"; version="{}"'.format( - command.tool.description, command.tool.version + TOOL_DESCRIPTION, TOOL_VERSION ) if success: event_outcome_text = "Positive" else: event_outcome_text = "Not identified" - if not format: - format = "No Matching Format" + if not puid or puid == "UNKNOWN": + puid = "No Matching Format" date = getUTCDate() @@ -35,124 +49,54 @@ def write_identification_event(file_uuid, command, format=None, success=True): eventDateTime=date, eventDetail=event_detail_text, eventOutcome=event_outcome_text, - eventOutcomeDetailNote=format, + eventOutcomeDetailNote=puid, ) -def write_file_id(file_uuid, format, output): +def write_file_id(file_id, format_version_obj): """ Write the identified format to the DB. - - :param str file_uuid: UUID of the file identified - :param FormatVersion format: FormatVersion it was identified as - :param str output: Text that generated the match """ - if format.pronom_id: - format_registry = "PRONOM" - key = format.pronom_id - else: - format_registry = "Archivematica Format Policy Registry" - key = output - - # Sometimes, this is null instead of an empty string - version = format.version or "" - FileID.objects.create( - file_id=file_uuid, - format_name=format.format.description, - format_version=version, - format_registry_name=format_registry, - format_registry_key=key, + file_id=file_id, + format_name=format_version_obj.format.description, + format_version=format_version_obj.version or "", + format_registry_name="PRONOM", + format_registry_key=format_version_obj.pronom_id, ) -def _default_idcommand(): - """Retrieve the default ``fpr.IDCommand``. - - We only expect to find one command enabled/active. - """ - return IDCommand.active.first() - - -def main(job, file_path, file_uuid, disable_reidentify): - command = _default_idcommand() - if command is None: - job.write_error("Unable to determine IDCommand.\n") - return 255 - - command_uuid = command.uuid - job.print_output("IDCommand:", command.description) - job.print_output("IDCommand UUID:", command.uuid) - job.print_output("IDTool:", command.tool.description) - job.print_output("IDTool UUID:", command.tool.uuid) - job.print_output(f"File: ({file_uuid}) {file_path}") - - file_ = File.objects.get(uuid=file_uuid) - +def identify_file_format(file_path, file_id, disable_reidentify): # If reidentification is disabled and a format identification event exists for this file, exit + file_obj = File.objects.get(uuid=file_id) if ( disable_reidentify - and file_.event_set.filter(event_type="format identification").exists() + and file_obj.event_set.filter(event_type="format identification").exists() ): - job.print_output( + logger.debug( "This file has already been identified, and re-identification is disabled. Skipping." ) return 0 - exitcode, output, err = executeOrRun( - command.script_type, - command.script, - arguments=[file_path], - printing=False, - capture_output=True, - ) - output = output.strip() + try: + puid = pygfried.identify(file_path) + except Exception as err: + logger.error("Error running pygfried: %s", err) + return 255 - if exitcode != 0: - job.print_error(f"Error: IDCommand with UUID {command_uuid} exited non-zero.") - job.print_error(f"Error: {err}") + if not puid or puid == "UNKNOWN": + write_identification_event(file_id, success=False) return 255 - job.print_output("Command output:", output) - # PUIDs are the same regardless of tool, so PUID-producing tools don't have "rules" per se - we just - # go straight to the FormatVersion table to see if there's a matching PUID try: - if command.config == "PUID": - version = FormatVersion.active.get(pronom_id=output) - else: - rule = IDRule.active.get(command_output=output, command=command) - version = rule.format - except IDRule.DoesNotExist: - job.print_error( - 'Error: No FPR identification rule for tool output "{}" found'.format( - output - ) - ) - write_identification_event(file_uuid, command, success=False) - return 255 - except IDRule.MultipleObjectsReturned: - job.print_error( - 'Error: Multiple FPR identification rules for tool output "{}" found'.format( - output - ) - ) - write_identification_event(file_uuid, command, success=False) - return 255 + format_version_obj = FormatVersion.active.get(pronom_id=puid) except FormatVersion.DoesNotExist: - job.print_error(f"Error: No FPR format record found for PUID {output}") - write_identification_event(file_uuid, command, success=False) + write_identification_event(file_id, success=False) return 255 - (ffv, created) = FileFormatVersion.objects.get_or_create( - file_uuid=file_, defaults={"format_version": version} - ) - if not created: # Update the version if it wasn't created new - ffv.format_version = version - ffv.save() - job.print_output(f"{file_path} identified as a {version.description}") - - write_identification_event(file_uuid, command, format=version.pronom_id) - write_file_id(file_uuid=file_uuid, format=version, output=output) + write_file_format_version(file_obj, format_version_obj) + write_identification_event(file_id, puid=puid) + write_file_id(file_id, format_version_obj) return 0 @@ -172,8 +116,7 @@ def call(jobs): with job.JobContext(): args = parser.parse_args(job.args[1:]) job.set_status( - main( - job, + identify_file_format( args.file_path, args.file_uuid, args.disable_reidentify, diff --git a/a3m/fpr/migrations/0001_initial.py b/a3m/fpr/migrations/0001_initial.py index 85204907..5fc98f7c 100644 --- a/a3m/fpr/migrations/0001_initial.py +++ b/a3m/fpr/migrations/0001_initial.py @@ -307,197 +307,6 @@ class Migration(migrations.Migration): ], options={"verbose_name": "Normalization tool"}, ), - migrations.CreateModel( - name="IDCommand", - fields=[ - ( - "id", - models.AutoField( - auto_created=True, - primary_key=True, - serialize=False, - verbose_name="ID", - ), - ), - ("enabled", models.BooleanField(default=True, verbose_name="enabled")), - ( - "lastmodified", - models.DateTimeField( - auto_now_add=True, verbose_name="last modified" - ), - ), - ( - "uuid", - models.UUIDField( - default=uuid.uuid4, - editable=False, - help_text="Unique identifier", - unique=True, - ), - ), - ( - "description", - models.CharField( - help_text="Name to identify script", - max_length=256, - verbose_name="description", - ), - ), - ( - "config", - models.CharField( - choices=[ - ("PUID", "PUID"), - ("MIME", "MIME type"), - ("ext", "File extension"), - ], - max_length=4, - verbose_name="configuration", - ), - ), - ( - "script", - models.TextField( - help_text="Script to be executed.", verbose_name="script" - ), - ), - ( - "script_type", - models.CharField( - choices=[ - ("bashScript", "Bash script"), - ("pythonScript", "Python script"), - ("command", "Command line"), - ("as_is", "No shebang needed"), - ], - max_length=16, - verbose_name="script type", - ), - ), - ( - "replaces", - models.ForeignKey( - blank=True, - null=True, - on_delete=django.db.models.deletion.CASCADE, - to="fpr.IDCommand", - to_field="uuid", - verbose_name="the related model", - ), - ), - ], - options={ - "verbose_name": "Format identification command", - "ordering": ["description"], - }, - ), - migrations.CreateModel( - name="IDTool", - fields=[ - ( - "id", - models.AutoField( - auto_created=True, - primary_key=True, - serialize=False, - verbose_name="ID", - ), - ), - ( - "uuid", - models.UUIDField( - default=uuid.uuid4, - editable=False, - help_text="Unique identifier", - unique=True, - ), - ), - ( - "description", - models.CharField( - help_text="Name of tool", - max_length=256, - verbose_name="description", - ), - ), - ("version", models.CharField(max_length=64, verbose_name="version")), - ("enabled", models.BooleanField(default=True, verbose_name="enabled")), - ("slug", models.SlugField(unique=True, verbose_name="slug")), - ], - options={"verbose_name": "Format identification tool"}, - ), - migrations.CreateModel( - name="IDRule", - fields=[ - ( - "id", - models.AutoField( - auto_created=True, - primary_key=True, - serialize=False, - verbose_name="ID", - ), - ), - ("enabled", models.BooleanField(default=True, verbose_name="enabled")), - ( - "lastmodified", - models.DateTimeField( - auto_now_add=True, verbose_name="last modified" - ), - ), - ( - "uuid", - models.UUIDField( - default=uuid.uuid4, - editable=False, - help_text="Unique identifier", - unique=True, - ), - ), - ("command_output", models.TextField(verbose_name="command output")), - ( - "command", - models.ForeignKey( - on_delete=django.db.models.deletion.CASCADE, - to="fpr.IDCommand", - to_field="uuid", - verbose_name="the related command", - ), - ), - ( - "format", - models.ForeignKey( - on_delete=django.db.models.deletion.CASCADE, - to="fpr.FormatVersion", - to_field="uuid", - verbose_name="the related format", - ), - ), - ( - "replaces", - models.ForeignKey( - blank=True, - null=True, - on_delete=django.db.models.deletion.CASCADE, - to="fpr.IDRule", - to_field="uuid", - verbose_name="the related model", - ), - ), - ], - options={"verbose_name": "Format identification rule"}, - ), - migrations.AddField( - model_name="idcommand", - name="tool", - field=models.ForeignKey( - null=True, - on_delete=django.db.models.deletion.CASCADE, - to="fpr.IDTool", - to_field="uuid", - verbose_name="the related tool", - ), - ), migrations.CreateModel( name="FPRule", fields=[ diff --git a/a3m/fpr/migrations/initial-data.json b/a3m/fpr/migrations/initial-data.json index af0071df..1a13cc16 100644 --- a/a3m/fpr/migrations/initial-data.json +++ b/a3m/fpr/migrations/initial-data.json @@ -43733,12710 +43733,6 @@ "model": "fpr.formatversion", "pk": 1872 }, - { - "fields": { - "replaces": null, - "uuid": "41efbe1b-3fc7-4b24-9290-d0fb5d0ea9e9", - "script": "import os.path\r\nimport subprocess\r\nimport sys\r\n\r\ndef file_tool(path):\r\n return subprocess.check_output(['file', path]).strip()\r\n\r\n(_, extension) = os.path.splitext(sys.argv[1])\r\nif extension:\r\n print extension.lower()\r\nelse:\r\n # Plaintext files frequently have no extension, but are common to identify.\r\n # file is pretty smart at figuring these out.\r\n file_output = file_tool(sys.argv[1])\r\n if 'text' in file_output:\r\n print '.txt'", - "lastmodified": "2013-10-18T22:31:29Z", - "tool": "115bc526-c75b-4d2a-9fb9-090c5b49620f", - "enabled": false, - "script_type": "pythonScript", - "config": "ext", - "description": "Identify by File Extension" - }, - "model": "fpr.idcommand", - "pk": 1 - }, - { - "fields": { - "replaces": null, - "uuid": "1c7dd02f-dfd8-46cb-af68-5b305aea1d6e", - "script": "import os.path\r\nimport re\r\nimport subprocess\r\nimport sys\r\n\r\ndef file_tool(path):\r\n return subprocess.check_output(['file', path]).strip()\r\n\r\nclass FidoFailed(Exception):\r\n def __init__(self, stdout, stderr, retcode):\r\n message = \"\"\" \r\nFido exited {retcode} and no format was found.\r\nstdout: {stdout}\r\n---\r\nstderr: {stderr}\r\n\"\"\".format(stdout=stdout, stderr=stderr, retcode=retcode)\r\n super(FidoFailed, self).__init__(message)\r\n\r\ndef identify(file_):\r\n # The default buffer size fido uses, 256KB, is too small to be able to detect certain formats\r\n # Formats like office documents and Adobe Illustrator .ai files will be identified as other, less-specific formats\r\n # This larger buffer size is a bit slower and consumes more RAM, so some users may wish to customize this to reduce the buffer size\r\n # See: https://projects.artefactual.com/issues/5941, https://projects.artefactual.com/issues/5731\r\n cmd = ['fido', '-bufsize', '1048576', os.path.abspath(file_)]\r\n process = subprocess.Popen(cmd, stdout=subprocess.PIPE, stderr=subprocess.PIPE, stdin=subprocess.PIPE)\r\n stdout, stderr = process.communicate()\r\n\r\n try:\r\n results = stdout.split('\\n')[0].split(',')\r\n except:\r\n raise FidoFailed(stdout, stderr, process.returncode)\r\n\r\n if process.returncode != 0 or results[-1] == '\"fail\"':\r\n raise FidoFailed(stdout, stderr, process.returncode)\r\n else:\r\n puid = results[2]\r\n if re.match('(.+)?fmt\\/\\d+', puid):\r\n return puid\r\n else:\r\n print >> sys.stderr, \"File identified as non-standard Fido code: {id}\".format(id=puid)\r\n return \"\" \r\n\r\ndef main(argv):\r\n try:\r\n print identify(argv[1])\r\n return 0\r\n except FidoFailed as e:\r\n file_output = file_tool(argv[1])\r\n # FIDO can't currently identify text files with no extension, and this\r\n # is a common enough usecase to special-case it\r\n if 'text' in file_output:\r\n print 'x-fmt/111'\r\n else:\r\n return e\r\n except Exception as e:\r\n return e\r\n\r\nif __name__ == '__main__':\r\n exit(main(sys.argv))", - "lastmodified": "2013-11-15T18:57:44Z", - "tool": "8f04f36d-8d43-43c2-92f9-da64c5530106", - "enabled": false, - "script_type": "pythonScript", - "config": "PUID", - "description": "Identify using Fido" - }, - "model": "fpr.idcommand", - "pk": 2 - }, - { - "fields": { - "replaces": "1c7dd02f-dfd8-46cb-af68-5b305aea1d6e", - "uuid": "a8e45bc1-eb35-4545-885c-dd552f1fde9a", - "script": "import os.path\nimport re\nimport subprocess\nimport sys\n\ndef file_tool(path):\n return subprocess.check_output(['file', path]).strip()\n\nclass FidoFailed(Exception):\n def __init__(self, stdout, stderr, retcode):\n message = \"\"\" \nFido exited {retcode} and no format was found.\nstdout: {stdout}\n---\nstderr: {stderr}\n\"\"\".format(stdout=stdout, stderr=stderr, retcode=retcode)\n super(FidoFailed, self).__init__(message)\n\ndef identify(file_):\n # The default buffer size fido uses, 256KB, is too small to be able to detect certain formats\n # Formats like office documents and Adobe Illustrator .ai files will be identified as other, less-specific formats\n # This larger buffer size is a bit slower and consumes more RAM, so some users may wish to customize this to reduce the buffer size\n # See: https://projects.artefactual.com/issues/5941, https://projects.artefactual.com/issues/5731\n cmd = ['fido', '-bufsize', '1048576',\n '-loadformats', '/usr/lib/archivematica/archivematicaCommon/externals/fido/archivematica_format_extensions.xml',\n os.path.abspath(file_)]\n process = subprocess.Popen(cmd, stdout=subprocess.PIPE, stderr=subprocess.PIPE, stdin=subprocess.PIPE)\n stdout, stderr = process.communicate()\n\n try:\n results = stdout.split('\\n')[0].split(',')\n except:\n raise FidoFailed(stdout, stderr, process.returncode)\n\n if process.returncode != 0 or results[-1] == '\"fail\"':\n raise FidoFailed(stdout, stderr, process.returncode)\n else:\n puid = results[2]\n if re.match('(.+)?fmt\\/\\d+', puid):\n return puid\n else:\n print >> sys.stderr, \"File identified as non-standard Fido code: {id}\".format(id=puid)\n return \"\" \n\ndef main(argv):\n try:\n print identify(argv[1])\n return 0\n except FidoFailed as e:\n file_output = file_tool(argv[1])\n # FIDO can't currently identify text files with no extension, and this\n # is a common enough usecase to special-case it\n if 'text' in file_output:\n print 'x-fmt/111'\n else:\n return e\n except Exception as e:\n return e\n\nif __name__ == '__main__':\n exit(main(sys.argv))", - "lastmodified": "2014-09-16T00:00:00Z", - "tool": "8f04f36d-8d43-43c2-92f9-da64c5530106", - "enabled": false, - "script_type": "pythonScript", - "config": "PUID", - "description": "Identify using Fido" - }, - "model": "fpr.idcommand", - "pk": 3 - }, - { - "fields": { - "replaces": null, - "uuid": "8cc792b4-362d-4002-8981-a4e808c04b24", - "script": "from __future__ import print_function\r\n\r\nimport json\r\nimport subprocess\r\nimport sys\r\n\r\n\r\nclass IdToolError(Exception):\r\n pass\r\n\r\n\r\nclass ParseError(IdToolError):\r\n def __init__(self, message=None):\r\n IdToolError.__init__(self, message or 'Siegfried returned unexpected output')\r\n\r\n\r\ndef sf_tool(path):\r\n return subprocess.check_output(['sf', '-json', path])\r\n\r\n\r\ndef file_tool(path):\r\n return subprocess.check_output(['file', path]).strip()\r\n\r\n\r\ndef file_fallback(path):\r\n if 'text' in file_tool(path):\r\n return 'x-fmt/111'\r\n raise Exception('No format was found.')\r\n\r\n\r\ndef find_puid(sf_output):\r\n result = json.loads(sf_output)\r\n try:\r\n matches = result['files'][0]['matches']\r\n except KeyError as e:\r\n raise ParseError('Siegfried returned unexpected output. KeyError: {}.'.format(e))\r\n\r\n if len(matches) == 0:\r\n raise ParseError('No matches found.')\r\n\r\n match = matches[0]\r\n puid = None\r\n\r\n if 'puid' in match:\r\n puid = match['puid']\r\n elif 'id' in match:\r\n puid = match['id']\r\n else:\r\n raise ParseError\r\n\r\n if puid == 'UNKNOWN':\r\n raise IdToolError('Siegfried determined that the file format is UNKNOWN.')\r\n\r\n return puid\r\n\r\n\r\ndef main(path):\r\n try:\r\n print(find_puid(sf_tool(path)))\r\n except IdToolError:\r\n print(file_fallback(path))\r\n\r\n\r\nif __name__ == '__main__':\r\n sys.exit(main(sys.argv[1]))\r\n", - "lastmodified": "2015-04-16T17:36:22Z", - "tool": "ea5274a2-9866-439c-a68c-5c8aadf6d3cd", - "enabled": false, - "script_type": "pythonScript", - "config": "PUID", - "description": "Identify using Siegfried" - }, - "model": "fpr.idcommand", - "pk": 4 - }, - { - "fields": { - "replaces": "8cc792b4-362d-4002-8981-a4e808c04b24", - "uuid": "9d2cefc1-2bd2-44e4-8d55-6cf8151eecff", - "script": "from __future__ import print_function\r\n\r\nimport json\r\nimport subprocess\r\nimport sys\r\n\r\n\r\nclass IdToolError(Exception):\r\n pass\r\n\r\n\r\nclass ParseError(IdToolError):\r\n PREFIX = 'The output produced by siegfried could not be parsed'\r\n def __init__(self, message=None):\r\n message = self.PREFIX if message is None else '{}: {}'.format(self.PREFIX, message)\r\n Exception.__init__(self, message)\r\n\r\n\r\ndef sf_tool(path):\r\n return subprocess.check_output(['sf', '-json', path])\r\n\r\n\r\ndef find_puid(sf_output):\r\n result = json.loads(sf_output)\r\n try:\r\n matches = result['files'][0]['matches']\r\n except KeyError as e:\r\n raise ParseError('error matching key {}'.format(e))\r\n\r\n if len(matches) == 0:\r\n raise ParseError('no matches found')\r\n\r\n match = matches[0]\r\n puid = None\r\n\r\n if 'puid' in match:\r\n puid = match['puid']\r\n elif 'id' in match:\r\n puid = match['id']\r\n else:\r\n raise ParseError\r\n\r\n if puid == 'UNKNOWN':\r\n raise IdToolError('siegfried determined that the file format is UNKNOWN')\r\n\r\n return puid\r\n\r\n\r\ndef main(path):\r\n try:\r\n print(find_puid(sf_tool(path)))\r\n except IdToolError as e:\r\n print(e, file=sys.stderr)\r\n return 1\r\n return 0\r\n\r\n\r\nif __name__ == '__main__':\r\n sys.exit(main(sys.argv[1]))\r\n", - "lastmodified": "2016-06-02T10:02:42Z", - "tool": "454df69d-5cc0-49fc-93e4-6fbb6ac659e7", - "enabled": false, - "script_type": "pythonScript", - "config": "PUID", - "description": "Identify using Siegfried" - }, - "model": "fpr.idcommand", - "pk": 5 - }, - { - "fields": { - "replaces": "a8e45bc1-eb35-4545-885c-dd552f1fde9a", - "uuid": "76006ad7-a401-48f6-98f6-2efc01003276", - "script": "import os.path\nimport re\nimport subprocess\nimport sys\n\ndef file_tool(path):\n return subprocess.check_output(['file', path]).strip()\n\nclass FidoFailed(Exception):\n def __init__(self, stdout, stderr, retcode):\n message = \"\"\" \nFido exited {retcode} and no format was found.\nstdout: {stdout}\n---\nstderr: {stderr}\n\"\"\".format(stdout=stdout, stderr=stderr, retcode=retcode)\n super(FidoFailed, self).__init__(message)\n\ndef identify(file_):\n # The default buffer size fido uses, 256KB, is too small to be able to detect certain formats\n # Formats like office documents and Adobe Illustrator .ai files will be identified as other, less-specific formats\n # This larger buffer size is a bit slower and consumes more RAM, so some users may wish to customize this to reduce the buffer size\n # See: https://projects.artefactual.com/issues/5941, https://projects.artefactual.com/issues/5731\n cmd = ['fido', '-bufsize', '1048576',\n '-loadformats', '/usr/lib/archivematica/archivematicaCommon/externals/fido/archivematica_format_extensions.xml',\n os.path.abspath(file_)]\n process = subprocess.Popen(cmd, stdout=subprocess.PIPE, stderr=subprocess.PIPE, stdin=subprocess.PIPE)\n stdout, stderr = process.communicate()\n\n try:\n results = stdout.split('\\n')[0].split(',')\n except:\n raise FidoFailed(stdout, stderr, process.returncode)\n\n if process.returncode != 0 or results[-1] == '\"fail\"':\n raise FidoFailed(stdout, stderr, process.returncode)\n else:\n puid = results[2]\n if re.match('(.+)?fmt\\/\\d+', puid):\n return puid\n else:\n print >> sys.stderr, \"File identified as non-standard Fido code: {id}\".format(id=puid)\n return \"\" \n\ndef main(argv):\n try:\n print identify(argv[1])\n return 0\n except FidoFailed as e:\n file_output = file_tool(argv[1])\n # FIDO can't currently identify text files with no extension, and this\n # is a common enough usecase to special-case it\n if 'text' in file_output:\n print 'x-fmt/111'\n else:\n return e\n except Exception as e:\n return e\n\nif __name__ == '__main__':\n exit(main(sys.argv))", - "lastmodified": "2020-04-10T14:38:18.784Z", - "tool": "c33c9d4d-121f-4db1-aa31-3d248c705e44", - "enabled": false, - "script_type": "pythonScript", - "config": "PUID", - "description": "Identify using Fido" - }, - "model": "fpr.idcommand", - "pk": 6 - }, - { - "fields": { - "replaces": "9d2cefc1-2bd2-44e4-8d55-6cf8151eecff", - "uuid": "df074736-e2f7-4102-b25d-569c099d410c", - "script": "from __future__ import print_function\r\n\r\nimport json\r\nimport subprocess\r\nimport sys\r\n\r\n\r\nclass IdToolError(Exception):\r\n pass\r\n\r\n\r\nclass ParseError(IdToolError):\r\n PREFIX = 'The output produced by siegfried could not be parsed'\r\n def __init__(self, message=None):\r\n message = self.PREFIX if message is None else '{}: {}'.format(self.PREFIX, message)\r\n Exception.__init__(self, message)\r\n\r\n\r\ndef sf_tool(path):\r\n return subprocess.check_output(['sf', '-json', path])\r\n\r\n\r\ndef find_puid(sf_output):\r\n result = json.loads(sf_output)\r\n try:\r\n matches = result['files'][0]['matches']\r\n except KeyError as e:\r\n raise ParseError('error matching key {}'.format(e))\r\n\r\n if len(matches) == 0:\r\n raise ParseError('no matches found')\r\n\r\n match = matches[0]\r\n puid = None\r\n\r\n if 'puid' in match:\r\n puid = match['puid']\r\n elif 'id' in match:\r\n puid = match['id']\r\n else:\r\n raise ParseError\r\n\r\n if puid == 'UNKNOWN':\r\n raise IdToolError('siegfried determined that the file format is UNKNOWN')\r\n\r\n return puid\r\n\r\n\r\ndef main(path):\r\n try:\r\n print(find_puid(sf_tool(path)))\r\n except IdToolError as e:\r\n print(e, file=sys.stderr)\r\n return 1\r\n return 0\r\n\r\n\r\nif __name__ == '__main__':\r\n sys.exit(main(sys.argv[1]))\r\n", - "lastmodified": "2020-04-10T14:38:18.787Z", - "tool": "454df69d-5cc0-49fc-93e4-6fbb6ac659e7", - "enabled": false, - "script_type": "pythonScript", - "config": "PUID", - "description": "Identify using Siegfried" - }, - "model": "fpr.idcommand", - "pk": 7 - }, - { - "fields": { - "replaces": "76006ad7-a401-48f6-98f6-2efc01003276", - "uuid": "6fa7b8d8-10f1-439d-888a-5ccb3a5be492", - "script": "import os.path\nimport re\nimport subprocess\nimport sys\n\ndef file_tool(path):\n return subprocess.check_output(['file', path]).strip()\n\nclass FidoFailed(Exception):\n def __init__(self, stdout, stderr, retcode):\n message = \"\"\" \nFido exited {retcode} and no format was found.\nstdout: {stdout}\n---\nstderr: {stderr}\n\"\"\".format(stdout=stdout, stderr=stderr, retcode=retcode)\n super(FidoFailed, self).__init__(message)\n\ndef identify(file_):\n # The default buffer size fido uses, 256KB, is too small to be able to detect certain formats\n # Formats like office documents and Adobe Illustrator .ai files will be identified as other, less-specific formats\n # This larger buffer size is a bit slower and consumes more RAM, so some users may wish to customize this to reduce the buffer size\n # See: https://projects.artefactual.com/issues/5941, https://projects.artefactual.com/issues/5731\n cmd = ['fido', '-bufsize', '1048576',\n '-loadformats', '/usr/lib/archivematica/archivematicaCommon/externals/fido/archivematica_format_extensions.xml',\n os.path.abspath(file_)]\n process = subprocess.Popen(cmd, stdout=subprocess.PIPE, stderr=subprocess.PIPE, stdin=subprocess.PIPE)\n stdout, stderr = process.communicate()\n\n try:\n results = stdout.split('\\n')[0].split(',')\n except:\n raise FidoFailed(stdout, stderr, process.returncode)\n\n if process.returncode != 0 or results[-1] == '\"fail\"':\n raise FidoFailed(stdout, stderr, process.returncode)\n else:\n puid = results[2]\n if re.match('(.+)?fmt\\/\\d+', puid):\n return puid\n else:\n print >> sys.stderr, \"File identified as non-standard Fido code: {id}\".format(id=puid)\n return \"\" \n\ndef main(argv):\n try:\n print identify(argv[1])\n return 0\n except FidoFailed as e:\n file_output = file_tool(argv[1])\n # FIDO can't currently identify text files with no extension, and this\n # is a common enough usecase to special-case it\n if 'text' in file_output:\n print 'x-fmt/111'\n else:\n return e\n except Exception as e:\n return e\n\nif __name__ == '__main__':\n exit(main(sys.argv))", - "lastmodified": "2020-04-10T14:38:19.419Z", - "tool": "c33c9d4d-121f-4db1-aa31-3d248c705e44", - "enabled": false, - "script_type": "pythonScript", - "config": "PUID", - "description": "Identify using Fido 1.3.9" - }, - "model": "fpr.idcommand", - "pk": 8 - }, - { - "fields": { - "replaces": "df074736-e2f7-4102-b25d-569c099d410c", - "uuid": "75290b14-2931-455f-bdde-3b4b3f8b7f15", - "script": "from __future__ import print_function\r\n\r\nimport json\r\nimport subprocess\r\nimport sys\r\n\r\n\r\nclass IdToolError(Exception):\r\n pass\r\n\r\n\r\nclass ParseError(IdToolError):\r\n PREFIX = 'The output produced by siegfried could not be parsed'\r\n def __init__(self, message=None):\r\n message = self.PREFIX if message is None else '{}: {}'.format(self.PREFIX, message)\r\n Exception.__init__(self, message)\r\n\r\n\r\ndef sf_tool(path):\r\n return subprocess.check_output(['sf', '-json', path])\r\n\r\n\r\ndef find_puid(sf_output):\r\n result = json.loads(sf_output)\r\n try:\r\n matches = result['files'][0]['matches']\r\n except KeyError as e:\r\n raise ParseError('error matching key {}'.format(e))\r\n\r\n if len(matches) == 0:\r\n raise ParseError('no matches found')\r\n\r\n match = matches[0]\r\n puid = None\r\n\r\n if 'puid' in match:\r\n puid = match['puid']\r\n elif 'id' in match:\r\n puid = match['id']\r\n else:\r\n raise ParseError\r\n\r\n if puid == 'UNKNOWN':\r\n raise IdToolError('siegfried determined that the file format is UNKNOWN')\r\n\r\n return puid\r\n\r\n\r\ndef main(path):\r\n try:\r\n print(find_puid(sf_tool(path)))\r\n except IdToolError as e:\r\n print(e, file=sys.stderr)\r\n return 1\r\n return 0\r\n\r\n\r\nif __name__ == '__main__':\r\n sys.exit(main(sys.argv[1]))\r\n", - "lastmodified": "2020-04-10T14:38:19.422Z", - "tool": "454df69d-5cc0-49fc-93e4-6fbb6ac659e7", - "enabled": false, - "script_type": "pythonScript", - "config": "PUID", - "description": "Identify using Siegfried 1.7.10" - }, - "model": "fpr.idcommand", - "pk": 9 - }, - { - "fields": { - "replaces": "6fa7b8d8-10f1-439d-888a-5ccb3a5be492", - "uuid": "e586f750-6230-42d7-8d12-1e24ca2aa658", - "script": "import os.path\nimport re\nimport subprocess\nimport sys\n\ndef file_tool(path):\n return subprocess.check_output(['file', path]).strip()\n\nclass FidoFailed(Exception):\n def __init__(self, stdout, stderr, retcode):\n message = \"\"\" \nFido exited {retcode} and no format was found.\nstdout: {stdout}\n---\nstderr: {stderr}\n\"\"\".format(stdout=stdout, stderr=stderr, retcode=retcode)\n super(FidoFailed, self).__init__(message)\n\ndef identify(file_):\n # The default buffer size fido uses, 256KB, is too small to be able to detect certain formats\n # Formats like office documents and Adobe Illustrator .ai files will be identified as other, less-specific formats\n # This larger buffer size is a bit slower and consumes more RAM, so some users may wish to customize this to reduce the buffer size\n # See: https://projects.artefactual.com/issues/5941, https://projects.artefactual.com/issues/5731\n cmd = ['fido', '-bufsize', '1048576',\n '-loadformats', '/usr/lib/archivematica/archivematicaCommon/externals/fido/archivematica_format_extensions.xml',\n os.path.abspath(file_)]\n process = subprocess.Popen(cmd, stdout=subprocess.PIPE, stderr=subprocess.PIPE, stdin=subprocess.PIPE)\n stdout, stderr = process.communicate()\n\n try:\n results = stdout.split('\\n')[0].split(',')\n except:\n raise FidoFailed(stdout, stderr, process.returncode)\n\n if process.returncode != 0 or results[-1] == '\"fail\"':\n raise FidoFailed(stdout, stderr, process.returncode)\n else:\n puid = results[2]\n if re.match('(.+)?fmt\\/\\d+', puid):\n return puid\n else:\n print >> sys.stderr, \"File identified as non-standard Fido code: {id}\".format(id=puid)\n return \"\" \n\ndef main(argv):\n try:\n print identify(argv[1])\n return 0\n except FidoFailed as e:\n file_output = file_tool(argv[1])\n # FIDO can't currently identify text files with no extension, and this\n # is a common enough usecase to special-case it\n if 'text' in file_output:\n print 'x-fmt/111'\n else:\n return e\n except Exception as e:\n return e\n\nif __name__ == '__main__':\n exit(main(sys.argv))", - "lastmodified": "2020-04-10T14:38:19.436Z", - "tool": "c33c9d4d-121f-4db1-aa31-3d248c705e44", - "enabled": false, - "script_type": "pythonScript", - "config": "PUID", - "description": "Identify using Fido 1.3.10" - }, - "model": "fpr.idcommand", - "pk": 10 - }, - { - "fields": { - "replaces": "e586f750-6230-42d7-8d12-1e24ca2aa658", - "uuid": "213d1589-c255-474f-81ac-f0a618181e40", - "script": "import os.path\nimport re\nimport subprocess\nimport sys\n\ndef file_tool(path):\n return subprocess.check_output(['file', path]).strip()\n\nclass FidoFailed(Exception):\n def __init__(self, stdout, stderr, retcode):\n message = \"\"\" \nFido exited {retcode} and no format was found.\nstdout: {stdout}\n---\nstderr: {stderr}\n\"\"\".format(stdout=stdout, stderr=stderr, retcode=retcode)\n super(FidoFailed, self).__init__(message)\n\ndef identify(file_):\n # The default buffer size fido uses, 256KB, is too small to be able to detect certain formats\n # Formats like office documents and Adobe Illustrator .ai files will be identified as other, less-specific formats\n # This larger buffer size is a bit slower and consumes more RAM, so some users may wish to customize this to reduce the buffer size\n # See: https://projects.artefactual.com/issues/5941, https://projects.artefactual.com/issues/5731\n cmd = ['fido', '-bufsize', '1048576',\n '-loadformats', '/usr/lib/archivematica/archivematicaCommon/externals/fido/archivematica_format_extensions.xml',\n os.path.abspath(file_)]\n process = subprocess.Popen(cmd, stdout=subprocess.PIPE, stderr=subprocess.PIPE, stdin=subprocess.PIPE)\n stdout, stderr = process.communicate()\n\n try:\n results = stdout.split('\\n')[0].split(',')\n except:\n raise FidoFailed(stdout, stderr, process.returncode)\n\n if process.returncode != 0 or results[-1] == '\"fail\"':\n raise FidoFailed(stdout, stderr, process.returncode)\n else:\n puid = results[2]\n if re.match('(.+)?fmt\\/\\d+', puid):\n return puid\n else:\n print >> sys.stderr, \"File identified as non-standard Fido code: {id}\".format(id=puid)\n return \"\" \n\ndef main(argv):\n try:\n print identify(argv[1])\n return 0\n except FidoFailed as e:\n file_output = file_tool(argv[1])\n # FIDO can't currently identify text files with no extension, and this\n # is a common enough usecase to special-case it\n if 'text' in file_output:\n print 'x-fmt/111'\n else:\n return e\n except Exception as e:\n return e\n\nif __name__ == '__main__':\n exit(main(sys.argv))", - "lastmodified": "2020-04-10T14:38:19.463Z", - "tool": "c33c9d4d-121f-4db1-aa31-3d248c705e44", - "enabled": false, - "script_type": "pythonScript", - "config": "PUID", - "description": "Identify using Fido 1.3.12" - }, - "model": "fpr.idcommand", - "pk": 11 - }, - { - "fields": { - "replaces": "213d1589-c255-474f-81ac-f0a618181e40", - "uuid": "ff2c0b52-741d-4f7a-9b52-ba3529051af3", - "script": "import os.path\nimport re\nimport subprocess\nimport sys\n\ndef file_tool(path):\n return subprocess.check_output(['file', path]).strip()\n\nclass FidoFailed(Exception):\n def __init__(self, stdout, stderr, retcode):\n message = \"\"\" \nFido exited {retcode} and no format was found.\nstdout: {stdout}\n---\nstderr: {stderr}\n\"\"\".format(stdout=stdout, stderr=stderr, retcode=retcode)\n super(FidoFailed, self).__init__(message)\n\ndef identify(file_):\n # The default buffer size fido uses, 256KB, is too small to be able to detect certain formats\n # Formats like office documents and Adobe Illustrator .ai files will be identified as other, less-specific formats\n # This larger buffer size is a bit slower and consumes more RAM, so some users may wish to customize this to reduce the buffer size\n # See: https://projects.artefactual.com/issues/5941, https://projects.artefactual.com/issues/5731\n cmd = ['fido', '-bufsize', '1048576',\n '-loadformats', '/usr/lib/archivematica/archivematicaCommon/externals/fido/archivematica_format_extensions.xml',\n os.path.abspath(file_)]\n process = subprocess.Popen(cmd, stdout=subprocess.PIPE, stderr=subprocess.PIPE, stdin=subprocess.PIPE)\n stdout, stderr = process.communicate()\n\n try:\n results = stdout.split('\\n')[0].split(',')\n except:\n raise FidoFailed(stdout, stderr, process.returncode)\n\n if process.returncode != 0 or results[-1] == '\"fail\"':\n raise FidoFailed(stdout, stderr, process.returncode)\n else:\n puid = results[2]\n if re.match('(.+)?fmt\\/\\d+', puid):\n return puid\n else:\n print >> sys.stderr, \"File identified as non-standard Fido code: {id}\".format(id=puid)\n return \"\" \n\ndef main(argv):\n try:\n print identify(argv[1])\n return 0\n except FidoFailed as e:\n file_output = file_tool(argv[1])\n # FIDO can't currently identify text files with no extension, and this\n # is a common enough usecase to special-case it\n if 'text' in file_output:\n print 'x-fmt/111'\n else:\n return e\n except Exception as e:\n return e\n\nif __name__ == '__main__':\n exit(main(sys.argv))", - "lastmodified": "2020-04-10T14:38:19.963Z", - "tool": "c33c9d4d-121f-4db1-aa31-3d248c705e44", - "enabled": false, - "script_type": "pythonScript", - "config": "PUID", - "description": "Identify using Fido 1.4.1" - }, - "model": "fpr.idcommand", - "pk": 12 - }, - { - "fields": { - "replaces": "75290b14-2931-455f-bdde-3b4b3f8b7f15", - "uuid": "9402ad69-f045-4d0a-8042-9c990645910a", - "script": "from __future__ import print_function\r\n\r\nimport json\r\nimport subprocess\r\nimport sys\r\n\r\n\r\nclass IdToolError(Exception):\r\n pass\r\n\r\n\r\nclass ParseError(IdToolError):\r\n PREFIX = 'The output produced by siegfried could not be parsed'\r\n def __init__(self, message=None):\r\n message = self.PREFIX if message is None else '{}: {}'.format(self.PREFIX, message)\r\n Exception.__init__(self, message)\r\n\r\n\r\ndef sf_tool(path):\r\n return subprocess.check_output(['sf', '-json', path])\r\n\r\n\r\ndef find_puid(sf_output):\r\n result = json.loads(sf_output)\r\n try:\r\n matches = result['files'][0]['matches']\r\n except KeyError as e:\r\n raise ParseError('error matching key {}'.format(e))\r\n\r\n if len(matches) == 0:\r\n raise ParseError('no matches found')\r\n\r\n match = matches[0]\r\n puid = None\r\n\r\n if 'puid' in match:\r\n puid = match['puid']\r\n elif 'id' in match:\r\n puid = match['id']\r\n else:\r\n raise ParseError\r\n\r\n if puid == 'UNKNOWN':\r\n raise IdToolError('siegfried determined that the file format is UNKNOWN')\r\n\r\n return puid\r\n\r\n\r\ndef main(path):\r\n try:\r\n print(find_puid(sf_tool(path)))\r\n except IdToolError as e:\r\n print(e, file=sys.stderr)\r\n return 1\r\n return 0\r\n\r\n\r\nif __name__ == '__main__':\r\n sys.exit(main(sys.argv[1]))\r\n", - "lastmodified": "2020-04-10T14:38:19.969Z", - "tool": "454df69d-5cc0-49fc-93e4-6fbb6ac659e7", - "enabled": true, - "script_type": "pythonScript", - "config": "PUID", - "description": "Identify using Siegfried 1.8.0" - }, - "model": "fpr.idcommand", - "pk": 13 - }, - { - "fields": { - "replaces": null, - "uuid": "f8c16522-7021-4f75-b0cf-76beb1a2c40d", - "format": "8943dfdc-2b37-47df-b00f-76472e92e56d", - "lastmodified": "2013-11-15T01:18:34Z", - "enabled": true, - "command_output": ".gif", - "command": "41efbe1b-3fc7-4b24-9290-d0fb5d0ea9e9" - }, - "model": "fpr.idrule", - "pk": 1 - }, - { - "fields": { - "replaces": null, - "uuid": "9921d772-78e8-4d7c-ac88-4165e3bbcac7", - "format": "8943dfdc-2b37-47df-b00f-76472e92e56d", - "lastmodified": "2013-11-15T01:18:34Z", - "enabled": true, - "command_output": ".giff", - "command": "41efbe1b-3fc7-4b24-9290-d0fb5d0ea9e9" - }, - "model": "fpr.idrule", - "pk": 2 - }, - { - "fields": { - "replaces": null, - "uuid": "48e38041-1b9d-4f36-ac1a-5ac21e76a092", - 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"uuid": "59e445f0-0b82-41ce-8330-2efd5a751f9e", - "format": "323b7e64-b869-4026-a358-1ba67a61b866", - "lastmodified": "2020-01-22T15:22:33.927Z", - "enabled": true, - "command_output": ".qxp", - "command": "41efbe1b-3fc7-4b24-9290-d0fb5d0ea9e9" - }, - "model": "fpr.idrule", - "pk": 949 - }, - { - "fields": { - "replaces": null, - "uuid": "ca07311a-a346-4b3a-a859-3d12aae53f8c", - "format": "93355773-5b2b-483e-b6bb-4dbef2f963bd", - "lastmodified": "2020-01-22T15:22:33.977Z", - "enabled": true, - "command_output": ".lpd", - "command": "41efbe1b-3fc7-4b24-9290-d0fb5d0ea9e9" - }, - "model": "fpr.idrule", - "pk": 950 - }, - { - "fields": { - "replaces": null, - "uuid": "eb5a6d04-a3fd-4fd4-9894-c2840dcf6c4b", - "format": "33b7086c-bafb-4246-8d4d-48392c0a7ce8", - "lastmodified": "2020-01-22T15:22:34.029Z", - "enabled": true, - "command_output": ".zdp", - "command": "41efbe1b-3fc7-4b24-9290-d0fb5d0ea9e9" - }, - "model": "fpr.idrule", - "pk": 951 - }, - { - "fields": { - "replaces": null, - "uuid": "3f7b44a5-773a-4d46-99a9-14c9837928f2", - "format": "58d0ed75-52f5-4c1e-9de7-fcc881275937", - "lastmodified": "2020-01-22T15:22:34.073Z", - "enabled": true, - "command_output": ".zdl", - "command": "41efbe1b-3fc7-4b24-9290-d0fb5d0ea9e9" - }, - "model": "fpr.idrule", - "pk": 952 - }, - { - "fields": { - "replaces": null, - "uuid": "ddbc3233-378b-4d2e-b2e2-cc431adf0056", - "format": "e0105c3b-76b5-45a0-8dfd-75ad457f0c88", - "lastmodified": "2020-01-22T15:22:34.119Z", - "enabled": true, - "command_output": ".albm", - "command": "41efbe1b-3fc7-4b24-9290-d0fb5d0ea9e9" - }, - "model": "fpr.idrule", - "pk": 953 - }, - { - "fields": { - "replaces": null, - "uuid": "3d35f5cd-044e-425c-ad03-ecac0709be50", - "format": "53c46fae-e6c9-42a3-a99c-186b1421cf1c", - "lastmodified": "2020-01-22T15:22:34.168Z", - "enabled": true, - "command_output": ".amu", - "command": "41efbe1b-3fc7-4b24-9290-d0fb5d0ea9e9" - }, - "model": "fpr.idrule", - "pk": 954 - }, - { - "fields": { - "replaces": null, - "uuid": "a5646920-7872-4658-a61d-186923bf8f1a", - "format": "7cad452d-b597-42a5-b612-040d6eb7e193", - "lastmodified": "2020-01-22T15:22:34.216Z", - "enabled": true, - "command_output": ".lmu", - "command": "41efbe1b-3fc7-4b24-9290-d0fb5d0ea9e9" - }, - "model": "fpr.idrule", - "pk": 955 - }, - { - "fields": { - "replaces": null, - "uuid": "bf44e999-bc89-47e5-b720-e5edabb7871c", - "format": "e7d9a3ac-f573-43e5-b30e-3f654b93d2de", - "lastmodified": "2020-01-22T15:22:34.267Z", - "enabled": true, - "command_output": ".bxu", - "command": "41efbe1b-3fc7-4b24-9290-d0fb5d0ea9e9" - }, - "model": "fpr.idrule", - "pk": 956 - }, - { - "fields": { - "replaces": null, - "uuid": "ffa62fbf-d99a-441b-8a06-c4db6c1a619f", - "format": "a242c85f-82eb-4c0c-8823-5b2396b6ba98", - "lastmodified": "2020-01-22T15:22:34.421Z", - "enabled": true, - "command_output": ".rmgc", - "command": "41efbe1b-3fc7-4b24-9290-d0fb5d0ea9e9" - }, - "model": "fpr.idrule", - "pk": 957 - }, - { - "fields": { - "replaces": null, - "uuid": "a6c96937-1751-4eaf-aed6-ec5212fdaaa4", - "format": "9049e126-8524-44bd-ab98-3489e7f39778", - "lastmodified": "2020-01-22T15:22:34.457Z", - "enabled": true, - "command_output": ".max", - "command": "41efbe1b-3fc7-4b24-9290-d0fb5d0ea9e9" - }, - "model": "fpr.idrule", - "pk": 958 - }, - { - "fields": { - "replaces": null, - "uuid": "ca2738ef-23e8-44ab-a43a-6c2147e3677e", - "format": "03d3a8b5-5f8c-49a1-81eb-44fcc23b7db0", - "lastmodified": "2020-01-22T15:22:34.562Z", - "enabled": true, - "command_output": ".asics", - "command": "41efbe1b-3fc7-4b24-9290-d0fb5d0ea9e9" - }, - "model": "fpr.idrule", - "pk": 959 - }, - { - "fields": { - "replaces": null, - "uuid": "711de29e-f99e-4eb6-b0d0-ac2776d4b383", - "format": "7084a36f-5548-4bb1-a548-de97c9c4d8c1", - "lastmodified": "2020-01-22T15:22:34.752Z", - "enabled": true, - "command_output": ".fdb", - "command": "41efbe1b-3fc7-4b24-9290-d0fb5d0ea9e9" - }, - "model": "fpr.idrule", - "pk": 960 - }, - { - "fields": { - "slug": "file-extension-01", - "version": "0.1", - "enabled": true, - "uuid": "115bc526-c75b-4d2a-9fb9-090c5b49620f", - "description": "File Extension" - }, - "model": "fpr.idtool", - "pk": 1 - }, - { - "fields": { - "slug": "fido-1", - "version": "1", - "enabled": false, - "uuid": "8f04f36d-8d43-43c2-92f9-da64c5530106", - "description": "Fido" - }, - "model": "fpr.idtool", - "pk": 2 - }, - { - "fields": { - "slug": "siegfried-100", - "version": "1.0.0", - "enabled": false, - "uuid": "ea5274a2-9866-439c-a68c-5c8aadf6d3cd", - "description": "Siegfried" - }, - "model": "fpr.idtool", - "pk": 3 - }, - { - "fields": { - "slug": "fido-141", - "version": "1.4.1", - "enabled": true, - "uuid": "c33c9d4d-121f-4db1-aa31-3d248c705e44", - "description": "Fido" - }, - "model": "fpr.idtool", - "pk": 4 - }, - { - "fields": { - "slug": "siegfried-180", - "version": "1.8.0", - "enabled": true, - "uuid": "454df69d-5cc0-49fc-93e4-6fbb6ac659e7", - "description": "Siegfried" - }, - "model": "fpr.idtool", - "pk": 5 - }, { "fields": { "replaces": null, diff --git a/a3m/fpr/models.py b/a3m/fpr/models.py index 8d9e0b7b..8654e69d 100644 --- a/a3m/fpr/models.py +++ b/a3m/fpr/models.py @@ -244,165 +244,6 @@ def __unicode__(self): } -# ########### ID TOOLS ############ - - -class IDCommand(VersionedModel, models.Model): - """Command to run an IDToolConfig and parse the output. - - IDCommand runs 'script' (which runs an IDTool with a specific IDToolConfig) - and parses the output.""" - - uuid = models.UUIDField( - editable=False, - unique=True, - default=uuid.uuid4, - help_text=_("Unique identifier"), - ) - description = models.CharField( - _("description"), max_length=256, help_text=_("Name to identify script") - ) - CONFIG_CHOICES = ( - ("PUID", _("PUID")), - ("MIME", _("MIME type")), - ("ext", _("File extension")), - ) - config = models.CharField(_("configuration"), max_length=4, choices=CONFIG_CHOICES) - - script = models.TextField(_("script"), help_text=_("Script to be executed.")) - SCRIPT_TYPE_CHOICES = ( - ("bashScript", _("Bash script")), - ("pythonScript", _("Python script")), - ("command", _("Command line")), - ("as_is", _("No shebang needed")), - ) - script_type = models.CharField( - _("script type"), max_length=16, choices=SCRIPT_TYPE_CHOICES - ) - tool = models.ForeignKey( - "IDTool", - to_field="uuid", - null=True, - verbose_name=_("the related tool"), - on_delete=models.CASCADE, - ) - - class Meta: - verbose_name = _("Format identification command") - ordering = ["description"] - - def __unicode__(self): - return _("%(tool)s %(config)s runs %(command)s") % { - "tool": self.tool, - "config": self.get_config_display(), - "command": self.description, - } - - def save(self, *args, **kwargs): - """Override save() to ensure that only one command is enabled.""" - if self.enabled: - try: - cmd = IDCommand.objects.get(enabled=True) - except IDCommand.DoesNotExist: - pass - else: - if cmd != self: - cmd.enabled = False - cmd.save() - super().save(*args, **kwargs) - - -class IDRule(VersionedModel, models.Model): - """Mapping between an IDCommand output and a FormatVersion.""" - - uuid = models.UUIDField( - editable=False, - unique=True, - default=uuid.uuid4, - help_text=_("Unique identifier"), - ) - command = models.ForeignKey( - "IDCommand", - to_field="uuid", - verbose_name=_("the related command"), - on_delete=models.CASCADE, - ) - format = models.ForeignKey( - "FormatVersion", - to_field="uuid", - verbose_name=_("the related format"), - on_delete=models.CASCADE, - ) - # Output from IDToolConfig.command to match on that gives the format - command_output = models.TextField(_("command output")) - - class Meta: - verbose_name = _("Format identification rule") - - def validate_unique(self, *args, **kwargs): - super().validate_unique(*args, **kwargs) - - qs = self.__class__._default_manager.filter( - command=self.command, command_output=self.command_output, enabled=1 - ) - - if not self._state.adding and self.pk is not None: - qs = qs.exclude(pk=self.pk) - - if qs.exists(): - raise ValidationError( - { - NON_FIELD_ERRORS: [ - _( - "Unable to save, a rule with this output already exists for this command." - ) - ] - } - ) - - def __unicode__(self): - return _("Format identification rule %(uuid)s") % {"uuid": self.uuid} - - def long_name(self): - return _("%(command)s with %(output)s is %(format)s") % { - "command": self.command, - "output": self.command_output, - "format": self.format, - } - - -class IDTool(models.Model): - """Tool used to identify formats. Eg. DROID""" - - uuid = models.UUIDField( - editable=False, - unique=True, - default=uuid.uuid4, - help_text=_("Unique identifier"), - ) - description = models.CharField( - _("description"), max_length=256, help_text=_("Name of tool") - ) - version = models.CharField(_("version"), max_length=64) - enabled = models.BooleanField(_("enabled"), default=True) - slug = models.SlugField(_("slug"), unique=True) - - class Meta: - verbose_name = _("Format identification tool") - - objects = models.Manager() - active = Enabled() - - def __unicode__(self): - return _("%(description)s") % {"description": self.description} - - def _slug(self): - """Returns string to be slugified.""" - src = f"{self.description} {self.version}" - encoded = src.encode("utf-8")[: self._meta.get_field("slug").max_length] - return encoded.decode("utf-8", "ignore") - - # ########### NORMALIZATION ############ diff --git a/docs/installation.rst b/docs/installation.rst index 424bdd4e..5abeb24b 100644 --- a/docs/installation.rst +++ b/docs/installation.rst @@ -23,12 +23,6 @@ We don't have a comprehensive list of software dependencies yet or mechanisms to manage them dynamically. For the time being, here are some examples valid for an Ubuntu/Debian Linux environment: -`Siegfried `_:: - - wget -qO - https://bintray.com/user/downloadSubjectPublicKey?username=bintray | sudo apt-key add - - echo "deb http://dl.bintray.com/siegfried/debian wheezy main" | sudo tee -a /etc/apt/sources.list - sudo apt-get update && sudo apt-get install siegfried - `Unar `_:: sudo apt-get install unar diff --git a/requirements-dev.txt b/requirements-dev.txt index 5bcfe317..73905e6e 100644 --- a/requirements-dev.txt +++ b/requirements-dev.txt @@ -144,12 +144,6 @@ mypy-extensions==0.4.3 # mypy nodeenv==1.6.0 # via pre-commit -olefile==0.46 - # via - # -r requirements.txt - # opf-fido -opf-fido==1.4.1 - # via -r requirements.txt packaging==21.3 # via # pytest @@ -189,6 +183,8 @@ pycodestyle==2.8.0 # via flake8 pyflakes==2.4.0 # via flake8 +pygfried==0.2.0 + # via -r requirements.txt pygments==2.10.0 # via # -r requirements.txt @@ -246,7 +242,6 @@ six==1.16.0 # -r requirements.txt # grpcio # metsrw - # opf-fido # python-dateutil # tox # vcrpy diff --git a/requirements.in b/requirements.in index 03a6ed08..45bc8bdc 100644 --- a/requirements.in +++ b/requirements.in @@ -2,10 +2,10 @@ ammcpc~=0.1 metsrw~=0.3 bagit~=1.7 -opf-fido~=1.4 clamd~=1.0 lxml~=4.7 unidecode~=1.3 +pygfried~=0.2 # Django ORM Django~=3.2 diff --git a/requirements.txt b/requirements.txt index 4d7eb5ad..c5c3414f 100644 --- a/requirements.txt +++ b/requirements.txt @@ -64,10 +64,6 @@ lxml==4.7.1 # metsrw metsrw==0.3.20 # via -r requirements.in -olefile==0.46 - # via opf-fido -opf-fido==1.4.1 - # via -r requirements.in prometheus-client==0.12.0 # via -r requirements.in protobuf==3.19.1 @@ -75,6 +71,8 @@ protobuf==3.19.1 # googleapis-common-protos # grpcio-reflection # grpcio-status +pygfried==0.2.0 + # via -r requirements.in pygments==2.10.0 # via rich pyrsistent==0.18.0 @@ -93,7 +91,6 @@ six==1.16.0 # via # grpcio # metsrw - # opf-fido # python-dateutil sqlparse==0.4.2 # via django @@ -107,6 +104,3 @@ urllib3==1.26.7 # via # botocore # requests - -# The following packages are considered to be unsafe in a requirements file: -# setuptools diff --git a/setup.cfg b/setup.cfg index 4c7ef5e7..ba077698 100644 --- a/setup.cfg +++ b/setup.cfg @@ -39,10 +39,10 @@ install_requires = ammcpc~=0.1 metsrw~=0.3 bagit~=1.7 - opf-fido~=1.4 clamd~=1.0 lxml~=4.7 unidecode~=1.3 + pygfried~=0.2 # Django ORM Django~=3.2 # Infra diff --git a/tests/client/test_create_transfer_mets.py b/tests/client/test_create_transfer_mets.py index ba77d715..9d04fb89 100755 --- a/tests/client/test_create_transfer_mets.py +++ b/tests/client/test_create_transfer_mets.py @@ -1,4 +1,3 @@ -#!/usr/bin/env python import os import uuid diff --git a/tests/client/test_identify_file_format.py b/tests/client/test_identify_file_format.py new file mode 100644 index 00000000..01c7089d --- /dev/null +++ b/tests/client/test_identify_file_format.py @@ -0,0 +1,73 @@ +import uuid + +import pytest + +from a3m.client.clientScripts.identify_file_format import identify_file_format +from a3m.main.models import Event +from a3m.main.models import File +from a3m.main.models import FileFormatVersion +from a3m.main.models import FileID +from a3m.main.models import Transfer + + +@pytest.fixture() +def subdir_path(tmp_path): + subdir = tmp_path / "subdir1" + subdir.mkdir() + + return subdir + + +@pytest.fixture() +def file_path(subdir_path): + file_path = subdir_path / "script.py" + file_path.write_text("import sys; sys.exit(0)") + + return file_path + + +@pytest.fixture() +def transfer(db): + return Transfer.objects.create( + uuid=uuid.uuid4(), currentlocation=r"%transferDirectory%" + ) + + +@pytest.fixture() +def file_obj(db, transfer, tmp_path, file_path): + file_obj_path = "".join( + [transfer.currentlocation, str(file_path.relative_to(tmp_path))] + ) + file_obj = File.objects.create( + uuid=uuid.uuid4(), + transfer=transfer, + originallocation=file_obj_path, + currentlocation=file_obj_path, + removedtime=None, + size=24, + checksum="7e272e3e7076fef4248bc278918ecf003f05f275dff3bdb9140f1f4120b76ff1", + checksumtype="sha256", + ) + + return file_obj + + +def test_identify_file_format(file_obj, file_path): + code = identify_file_format(str(file_path), file_obj.uuid, disable_reidentify=False) + + assert code == 0 + + FileFormatVersion.objects.get( + file_uuid=file_obj.uuid, format_version__pronom_id="fmt/938" + ) + Event.objects.get( + file_uuid=file_obj, + event_type="format identification", + event_outcome="Positive", + event_outcome_detail="fmt/938", + ) + FileID.objects.get( + file_id=file_obj.uuid, + format_name="Python Script File", + format_registry_key="fmt/938", + )