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Fix file ending xml files
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All files should follow the posix standard and use LF as line endings
(instead of CRLF, as is the case on Windows)
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Aratz committed Sep 11, 2024
1 parent 345a2db commit 689966d
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150 changes: 75 additions & 75 deletions tests/resources/RunParameters_MiSeq.xml
Original file line number Diff line number Diff line change
@@ -1,76 +1,76 @@
<?xml version="1.0"?>
<RunParameters xmlns:xsd="http://www.w3.org/2001/XMLSchema" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance">
<EnableCloud>true</EnableCloud>
<RunParametersVersion>MiSeq_1_1</RunParametersVersion>
<CopyManifests>true</CopyManifests>
<FlowcellRFIDTag>
<SerialNumber>000000000-BWFHW</SerialNumber>
<PartNumber>15028382</PartNumber>
<ExpirationDate>2019-04-19T00:00:00</ExpirationDate>
</FlowcellRFIDTag>
<PR2BottleRFIDTag>
<SerialNumber>MS6738611-00PR2</SerialNumber>
<PartNumber>15041807</PartNumber>
<ExpirationDate>2019-04-23T00:00:00</ExpirationDate>
</PR2BottleRFIDTag>
<ReagentKitRFIDTag>
<SerialNumber>MS6728155-600V3</SerialNumber>
<PartNumber>15043962</PartNumber>
<ExpirationDate>2019-03-12T00:00:00</ExpirationDate>
</ReagentKitRFIDTag>
<Resumable>true</Resumable>
<ManifestFiles />
<AfterRunWashMethod>Post-Run Wash</AfterRunWashMethod>
<Setup>
<SupportMultipleSurfacesInUI>true</SupportMultipleSurfacesInUI>
<ApplicationVersion>2.6.2.1</ApplicationVersion>
<NumTilesPerSwath>19</NumTilesPerSwath>
<NumSwaths>1</NumSwaths>
<NumLanes>1</NumLanes>
<ApplicationName>MiSeq Control Software</ApplicationName>
</Setup>
<RunID>180718_M04499_0151_000000000-BWFHW</RunID>
<ScannerID>M04499</ScannerID>
<RunNumber>151</RunNumber>
<FPGAVersion>9.5.12</FPGAVersion>
<MCSVersion>2.6.2.1</MCSVersion>
<RTAVersion>1.18.54</RTAVersion>
<Barcode>000000000-BWFHW</Barcode>
<PR2BottleBarcode>MS6738611-00PR2</PR2BottleBarcode>
<ReagentKitPartNumberEntered>15043962</ReagentKitPartNumberEntered>
<ReagentKitVersion>Version3</ReagentKitVersion>
<ReagentKitBarcode>MS6728155-600V3</ReagentKitBarcode>
<PreviousPR2BottleBarcode />
<PreviousReagentKitBarcode />
<ExperimentName>Myeloid_DNA_Public_Data_MiSeq_11pM</ExperimentName>
<Chemistry>Amplicon</Chemistry>
<Username>svc_cpduser</Username>
<Workflow>
<Analysis>GenerateFASTQ</Analysis>
</Workflow>
<EnableAnalysis>false</EnableAnalysis>
<Reads>
<RunInfoRead Number="1" NumCycles="151" IsIndexedRead="N" />
<RunInfoRead Number="2" NumCycles="8" IsIndexedRead="Y" />
<RunInfoRead Number="3" NumCycles="8" IsIndexedRead="Y" />
<RunInfoRead Number="4" NumCycles="151" IsIndexedRead="N" />
</Reads>
<TempFolder>D:\Illumina\MiSeqTemp\180718_M04499_0151_000000000-BWFHW</TempFolder>
<AnalysisFolder>D:\Illumina\MiSeqAnalysis\180718_M04499_0151_000000000-BWFHW</AnalysisFolder>
<RunStartDate>180718</RunStartDate>
<MostRecentWashType>PostRun</MostRecentWashType>
<RecipeFolder>C:\Illumina\MiSeq Control Software\Recipe\V3</RecipeFolder>
<ILMNOnlyRecipeFolder>C:\Illumina\MiSeq Control Software\Recipe</ILMNOnlyRecipeFolder>
<SampleSheetName>Myeloid_DNA_Public_Data_MiSeq_11pM_SampleSheet</SampleSheetName>
<SampleSheetFolder>T:\nmouttham</SampleSheetFolder>
<ManifestFolder>D:\Illumina\MiSeq Control Software\Manifests</ManifestFolder>
<OutputFolder>\\ussd-prd-isi04\Halo\MiSeq_Runs\180718_M04499_0151_000000000-BWFHW</OutputFolder>
<FocusMethod>AutoFocus</FocusMethod>
<SurfaceToScan>Both</SurfaceToScan>
<SaveFocusImages>false</SaveFocusImages>
<SaveScanImages>true</SaveScanImages>
<CloudUsername>nmouttham@illumina.com</CloudUsername>
<RunManagementType>BaseSpaceCloud</RunManagementType>
<CloudRunId>105217112</CloudRunId>
<SendInstrumentHealthToILMN>true</SendInstrumentHealthToILMN>
<?xml version="1.0"?>
<RunParameters xmlns:xsd="http://www.w3.org/2001/XMLSchema" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance">
<EnableCloud>true</EnableCloud>
<RunParametersVersion>MiSeq_1_1</RunParametersVersion>
<CopyManifests>true</CopyManifests>
<FlowcellRFIDTag>
<SerialNumber>000000000-BWFHW</SerialNumber>
<PartNumber>15028382</PartNumber>
<ExpirationDate>2019-04-19T00:00:00</ExpirationDate>
</FlowcellRFIDTag>
<PR2BottleRFIDTag>
<SerialNumber>MS6738611-00PR2</SerialNumber>
<PartNumber>15041807</PartNumber>
<ExpirationDate>2019-04-23T00:00:00</ExpirationDate>
</PR2BottleRFIDTag>
<ReagentKitRFIDTag>
<SerialNumber>MS6728155-600V3</SerialNumber>
<PartNumber>15043962</PartNumber>
<ExpirationDate>2019-03-12T00:00:00</ExpirationDate>
</ReagentKitRFIDTag>
<Resumable>true</Resumable>
<ManifestFiles />
<AfterRunWashMethod>Post-Run Wash</AfterRunWashMethod>
<Setup>
<SupportMultipleSurfacesInUI>true</SupportMultipleSurfacesInUI>
<ApplicationVersion>2.6.2.1</ApplicationVersion>
<NumTilesPerSwath>19</NumTilesPerSwath>
<NumSwaths>1</NumSwaths>
<NumLanes>1</NumLanes>
<ApplicationName>MiSeq Control Software</ApplicationName>
</Setup>
<RunID>180718_M04499_0151_000000000-BWFHW</RunID>
<ScannerID>M04499</ScannerID>
<RunNumber>151</RunNumber>
<FPGAVersion>9.5.12</FPGAVersion>
<MCSVersion>2.6.2.1</MCSVersion>
<RTAVersion>1.18.54</RTAVersion>
<Barcode>000000000-BWFHW</Barcode>
<PR2BottleBarcode>MS6738611-00PR2</PR2BottleBarcode>
<ReagentKitPartNumberEntered>15043962</ReagentKitPartNumberEntered>
<ReagentKitVersion>Version3</ReagentKitVersion>
<ReagentKitBarcode>MS6728155-600V3</ReagentKitBarcode>
<PreviousPR2BottleBarcode />
<PreviousReagentKitBarcode />
<ExperimentName>Myeloid_DNA_Public_Data_MiSeq_11pM</ExperimentName>
<Chemistry>Amplicon</Chemistry>
<Username>svc_cpduser</Username>
<Workflow>
<Analysis>GenerateFASTQ</Analysis>
</Workflow>
<EnableAnalysis>false</EnableAnalysis>
<Reads>
<RunInfoRead Number="1" NumCycles="151" IsIndexedRead="N" />
<RunInfoRead Number="2" NumCycles="8" IsIndexedRead="Y" />
<RunInfoRead Number="3" NumCycles="8" IsIndexedRead="Y" />
<RunInfoRead Number="4" NumCycles="151" IsIndexedRead="N" />
</Reads>
<TempFolder>D:\Illumina\MiSeqTemp\180718_M04499_0151_000000000-BWFHW</TempFolder>
<AnalysisFolder>D:\Illumina\MiSeqAnalysis\180718_M04499_0151_000000000-BWFHW</AnalysisFolder>
<RunStartDate>180718</RunStartDate>
<MostRecentWashType>PostRun</MostRecentWashType>
<RecipeFolder>C:\Illumina\MiSeq Control Software\Recipe\V3</RecipeFolder>
<ILMNOnlyRecipeFolder>C:\Illumina\MiSeq Control Software\Recipe</ILMNOnlyRecipeFolder>
<SampleSheetName>Myeloid_DNA_Public_Data_MiSeq_11pM_SampleSheet</SampleSheetName>
<SampleSheetFolder>T:\nmouttham</SampleSheetFolder>
<ManifestFolder>D:\Illumina\MiSeq Control Software\Manifests</ManifestFolder>
<OutputFolder>\\ussd-prd-isi04\Halo\MiSeq_Runs\180718_M04499_0151_000000000-BWFHW</OutputFolder>
<FocusMethod>AutoFocus</FocusMethod>
<SurfaceToScan>Both</SurfaceToScan>
<SaveFocusImages>false</SaveFocusImages>
<SaveScanImages>true</SaveScanImages>
<CloudUsername>nmouttham@illumina.com</CloudUsername>
<RunManagementType>BaseSpaceCloud</RunManagementType>
<CloudRunId>105217112</CloudRunId>
<SendInstrumentHealthToILMN>true</SendInstrumentHealthToILMN>
</RunParameters>
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