From 689966d7ce84a7218d543e4741dfd125687d504c Mon Sep 17 00:00:00 2001 From: Adrien Coulier Date: Wed, 11 Sep 2024 13:26:42 +0200 Subject: [PATCH] Fix file ending xml files All files should follow the posix standard and use LF as line endings (instead of CRLF, as is the case on Windows) --- tests/resources/RunParameters_MiSeq.xml | 150 ++++++------- tests/resources/RunParameters_NS6000.xml | 272 +++++++++++------------ 2 files changed, 211 insertions(+), 211 deletions(-) diff --git a/tests/resources/RunParameters_MiSeq.xml b/tests/resources/RunParameters_MiSeq.xml index 0dc2db0..baff817 100755 --- a/tests/resources/RunParameters_MiSeq.xml +++ b/tests/resources/RunParameters_MiSeq.xml @@ -1,76 +1,76 @@ - - - true - MiSeq_1_1 - true - - 000000000-BWFHW - 15028382 - 2019-04-19T00:00:00 - - - MS6738611-00PR2 - 15041807 - 2019-04-23T00:00:00 - - - MS6728155-600V3 - 15043962 - 2019-03-12T00:00:00 - - true - - Post-Run Wash - - true - 2.6.2.1 - 19 - 1 - 1 - MiSeq Control Software - - 180718_M04499_0151_000000000-BWFHW - M04499 - 151 - 9.5.12 - 2.6.2.1 - 1.18.54 - 000000000-BWFHW - MS6738611-00PR2 - 15043962 - Version3 - MS6728155-600V3 - - - Myeloid_DNA_Public_Data_MiSeq_11pM - Amplicon - svc_cpduser - - GenerateFASTQ - - false - - - - - - - D:\Illumina\MiSeqTemp\180718_M04499_0151_000000000-BWFHW - D:\Illumina\MiSeqAnalysis\180718_M04499_0151_000000000-BWFHW - 180718 - PostRun - C:\Illumina\MiSeq Control Software\Recipe\V3 - C:\Illumina\MiSeq Control Software\Recipe - Myeloid_DNA_Public_Data_MiSeq_11pM_SampleSheet - T:\nmouttham - D:\Illumina\MiSeq Control Software\Manifests - \\ussd-prd-isi04\Halo\MiSeq_Runs\180718_M04499_0151_000000000-BWFHW - AutoFocus - Both - false - true - nmouttham@illumina.com - BaseSpaceCloud - 105217112 - true + + + true + MiSeq_1_1 + true + + 000000000-BWFHW + 15028382 + 2019-04-19T00:00:00 + + + MS6738611-00PR2 + 15041807 + 2019-04-23T00:00:00 + + + MS6728155-600V3 + 15043962 + 2019-03-12T00:00:00 + + true + + Post-Run Wash + + true + 2.6.2.1 + 19 + 1 + 1 + MiSeq Control Software + + 180718_M04499_0151_000000000-BWFHW + M04499 + 151 + 9.5.12 + 2.6.2.1 + 1.18.54 + 000000000-BWFHW + MS6738611-00PR2 + 15043962 + Version3 + MS6728155-600V3 + + + Myeloid_DNA_Public_Data_MiSeq_11pM + Amplicon + svc_cpduser + + GenerateFASTQ + + false + + + + + + + D:\Illumina\MiSeqTemp\180718_M04499_0151_000000000-BWFHW + D:\Illumina\MiSeqAnalysis\180718_M04499_0151_000000000-BWFHW + 180718 + PostRun + C:\Illumina\MiSeq Control Software\Recipe\V3 + C:\Illumina\MiSeq Control Software\Recipe + Myeloid_DNA_Public_Data_MiSeq_11pM_SampleSheet + T:\nmouttham + D:\Illumina\MiSeq Control Software\Manifests + \\ussd-prd-isi04\Halo\MiSeq_Runs\180718_M04499_0151_000000000-BWFHW + AutoFocus + Both + false + true + nmouttham@illumina.com + BaseSpaceCloud + 105217112 + true \ No newline at end of file diff --git a/tests/resources/RunParameters_NS6000.xml b/tests/resources/RunParameters_NS6000.xml index 7076526..c7523e0 100755 --- a/tests/resources/RunParameters_NS6000.xml +++ b/tests/resources/RunParameters_NS6000.xml @@ -1,137 +1,137 @@ - - - Both - PairedEnd - B - 36 - 0 - 10 - 10 - 36 - 0 - 10 - 10 - 183 - v3.4.4 - 1.6.0 - Clinical2_A1_DVT_SP_SampleSheet - - HMTFYDRXX - A - 20453004 - 04/28/2021 00:00:00 - 06/24/2020 16:30:00 - 1 - LTWashOnly;SP - SP - 3 - NV0217945-LIB - Universal - - 1000006638 - 12/31/2169 00:00:00 - 06/24/2020 16:30:00 - 4 - NV2862904-RGSBS - S2;S1;SP - I - 20448506 - 04/09/2021 00:00:00 - 06/24/2020 16:30:00 - 130 - 74 - 130 - 4 - NV2853433-RGCPE - SP - F - 20448504 - 04/06/2021 00:00:00 - 06/24/2020 16:30:00 - 330 - 274 - 5 - NV5045336-BUFFR - S2;S1;SP - 1 - 50000090 - 03/10/2021 00:00:00 - 274 - 06/24/2020 16:30:00 - 4 - - C:\Program Files\Illumina\NovaSeq Control Software\Recipe - \\ussd-file\Users\transfer\mdickover\20200624_Clinical2_A1_DVT_SampleSheets\Clinical2_A1_DVT_SP_SampleSheet.csv - false - /ilmn/outputfolder/200624_A00834_0183_BHMTFYDRXX/ - /ilmn/outputfolder - Z:\outputfolder\200624_A00834_0183_BHMTFYDRXX\ - \\ussd-prd-isi07.illumina.com\covid19seq\DVTRunsA1\200624_A00834_0183_BHMTFYDRXX\ - C:\ProgramData\Illumina\NovaSeq\NovaSeqTemp\200624_A00834_0183_BHMTFYDRXX\ - C:\ProgramData\Illumina\NovaSeq\NovaSeqTemp\RunSetupLogs\A00834_2020-06-24__16_16_10_SideB - 200624 - 200624_A00834_0183_BHMTFYDRXX - true - true - 195886694 - use1-prod - ilmn - true - true - false - false - false - false - false - A00834 - HighThroughput - NovaSeq Control Software - 1.6.0 - 35 - - - Fluidics Board - novaseq_flu@NovaSeq_1.24.4 - - - Left Buffer Interface Board - novaseq_bim@NovaSeq_1.24.4 - - - Right Buffer Interface Board - novaseq_bim@NovaSeq_1.24.4 - - - Chassis Module Board - novaseq_chm@NovaSeq_1.24.4 - - - Camera Interface Board - novaseq_cib_2@NovaSeq_1.24.4 - - - Focus Interface Board - novaseq_fib_2@NovaSeq_1.24.4 - - - Flow Cell Holder Board - novaseq_fch_2@NovaSeq_1.24.4 - - - Left Reagent Chiller Board - novaseq_rca@NovaSeq_1.24.4 - - - Right Reagent Chiller Board - novaseq_rca@NovaSeq_1.24.4 - - - System Thermal Board - novaseq_syst@NovaSeq_1.24.4 - - - true - 16F69449CDCEDA14 - 1.5.6.1074 - NovaSeqXp + + + Both + PairedEnd + B + 36 + 0 + 10 + 10 + 36 + 0 + 10 + 10 + 183 + v3.4.4 + 1.6.0 + Clinical2_A1_DVT_SP_SampleSheet + + HMTFYDRXX + A + 20453004 + 04/28/2021 00:00:00 + 06/24/2020 16:30:00 + 1 + LTWashOnly;SP + SP + 3 + NV0217945-LIB + Universal + + 1000006638 + 12/31/2169 00:00:00 + 06/24/2020 16:30:00 + 4 + NV2862904-RGSBS + S2;S1;SP + I + 20448506 + 04/09/2021 00:00:00 + 06/24/2020 16:30:00 + 130 + 74 + 130 + 4 + NV2853433-RGCPE + SP + F + 20448504 + 04/06/2021 00:00:00 + 06/24/2020 16:30:00 + 330 + 274 + 5 + NV5045336-BUFFR + S2;S1;SP + 1 + 50000090 + 03/10/2021 00:00:00 + 274 + 06/24/2020 16:30:00 + 4 + + C:\Program Files\Illumina\NovaSeq Control Software\Recipe + \\ussd-file\Users\transfer\mdickover\20200624_Clinical2_A1_DVT_SampleSheets\Clinical2_A1_DVT_SP_SampleSheet.csv + false + /ilmn/outputfolder/200624_A00834_0183_BHMTFYDRXX/ + /ilmn/outputfolder + Z:\outputfolder\200624_A00834_0183_BHMTFYDRXX\ + \\ussd-prd-isi07.illumina.com\covid19seq\DVTRunsA1\200624_A00834_0183_BHMTFYDRXX\ + C:\ProgramData\Illumina\NovaSeq\NovaSeqTemp\200624_A00834_0183_BHMTFYDRXX\ + C:\ProgramData\Illumina\NovaSeq\NovaSeqTemp\RunSetupLogs\A00834_2020-06-24__16_16_10_SideB + 200624 + 200624_A00834_0183_BHMTFYDRXX + true + true + 195886694 + use1-prod + ilmn + true + true + false + false + false + false + false + A00834 + HighThroughput + NovaSeq Control Software + 1.6.0 + 35 + + + Fluidics Board + novaseq_flu@NovaSeq_1.24.4 + + + Left Buffer Interface Board + novaseq_bim@NovaSeq_1.24.4 + + + Right Buffer Interface Board + novaseq_bim@NovaSeq_1.24.4 + + + Chassis Module Board + novaseq_chm@NovaSeq_1.24.4 + + + Camera Interface Board + novaseq_cib_2@NovaSeq_1.24.4 + + + Focus Interface Board + novaseq_fib_2@NovaSeq_1.24.4 + + + Flow Cell Holder Board + novaseq_fch_2@NovaSeq_1.24.4 + + + Left Reagent Chiller Board + novaseq_rca@NovaSeq_1.24.4 + + + Right Reagent Chiller Board + novaseq_rca@NovaSeq_1.24.4 + + + System Thermal Board + novaseq_syst@NovaSeq_1.24.4 + + + true + 16F69449CDCEDA14 + 1.5.6.1074 + NovaSeqXp \ No newline at end of file