Compile and lint

Switch uptrans and downtrans from pointers to indices #4983

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Run time

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Job	Run time
cppcheck	2m 11s
clang-tidy	2m 43s
macOS llvm clang MPI OpenMP	1m 36s
gcc 11 MPI	2m 56s
macOS llvm clang MPI	1m 58s
gcc 11	2m 27s
macOS llvm clang OpenMP	1m 27s
gcc 12 MPI	3m 21s
macOS llvm clang	1m 50s
gcc 12	2m 47s
gcc 13 MPI	3m 6s
gcc 13	2m 49s
gcc 14 MPI	5m 30s
gcc 14	5m 4s
nvc++ 24.7 MPI	12m 28s
nvc++ 24.7	11m 6s
clang-format	21s
	1h 3m 40s