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Merge pull request #32 from aryarm/explicit-envs
explicit channel specifications
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -1,15 +1,20 @@ | ||
| channels: | ||
| - defaults | ||
| - conda-forge | ||
| - nodefaults | ||
| dependencies: | ||
| - r-dplyr==0.8.5 | ||
| - r-r.devices==2.16.1 | ||
| - r-ranger==0.11.2 | ||
| - r-earth==5.1.2 | ||
| - conda-forge::coreutils==8.31 | ||
| - coreutils==8.31 | ||
| - r-mlr==2.17.1 | ||
| - r-parallelmap==1.5.0 | ||
| - r==3.5.1 | ||
| - r-readr==1.1.1 | ||
| - r-data.table==1.12.8 | ||
| - r-plyr==1.8.4 | ||
| - conda-forge::gawk==5.1.0 | ||
| - gawk==5.1.0 | ||
| - conda-forge::coreutils==8.31 | ||
| - conda-forge::sed==4.8 | ||
| - conda-forge::bash==5.0.018 | ||
| - conda-forge::gzip==1.10 |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -1,11 +1,16 @@ | ||
| channels: | ||
| - conda-forge | ||
| - nodefaults | ||
| dependencies: | ||
| - numpy==1.18.5 | ||
| - pandas==1.0.4 | ||
| - scikit-learn==0.23.1 | ||
| - matplotlib==3.1.2 | ||
| - coreutils==8.31 | ||
| - conda-forge::numpy==1.18.5 | ||
| - conda-forge::pandas==1.0.4 | ||
| - conda-forge::scikit-learn==0.23.1 | ||
| - conda-forge::matplotlib==3.1.2 | ||
| - conda-forge::coreutils==8.31 | ||
| - bioconda::pysam==0.15.3 | ||
| - bioconda::bcftools==1.10.2 | ||
| - gawk==5.1.0 | ||
| - conda-forge::gawk==5.1.0 | ||
| - conda-forge::coreutils==8.31 | ||
| - conda-forge::sed==4.8 | ||
| - conda-forge::bash==5.0.018 | ||
| - conda-forge::gzip==1.10 |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -1,34 +1,38 @@ | ||
| channels: | ||
| - defaults | ||
| - conda-forge | ||
| - nodefaults | ||
| dependencies: | ||
| - r-pbapply==1.4_2 | ||
| - r-stringr==1.4.0 | ||
| - r-readr==1.1.1 | ||
| - conda-forge::r-pbapply==1.4_2 | ||
| - conda-forge::r-stringr==1.4.0 | ||
| - conda-forge::r-readr==1.1.1 | ||
| - bioconda::bioconductor-rsamtools==1.34.0 | ||
| - gawk==5.1.0 | ||
| - tabix==0.2.6 | ||
| - bcftools==1.9=ha228f0b_4 | ||
| - conda-forge::gawk==5.1.0 | ||
| - bioconda::tabix==0.2.6 | ||
| - bioconda::bcftools==1.9=ha228f0b_4 | ||
| - bioconda::delly==0.8.3 | ||
| - bioconda::bioconductor-bsgenome.hsapiens.ucsc.hg19==1.4.0 | ||
| - bioconda::bioconductor-biovizbase==1.30.1 | ||
| - vcftools==0.1.16 | ||
| - bioconda::vcftools==0.1.16 | ||
| - conda-forge::r-rmutil==1.1.4 | ||
| - gatk4==4.1.7.0 | ||
| - r-lattice==0.20_41 | ||
| - r-reshape==0.8.8 | ||
| - vardict-java==1.7.0 | ||
| - manta==1.6.0 | ||
| - bwa==0.7.17 | ||
| - r-data.table==1.12.8 | ||
| - r-plyr==1.8.4 | ||
| - samtools==1.9=h8571acd_11 | ||
| - strelka==2.9.10 | ||
| - bioconda::gatk4==4.1.7.0 | ||
| - conda-forge::r-lattice==0.20_41 | ||
| - conda-forge::r-reshape==0.8.8 | ||
| - bioconda::vardict-java==1.7.0 | ||
| - bioconda::manta==1.6.0 | ||
| - bioconda::bwa==0.7.17 | ||
| - conda-forge::r-data.table==1.12.8 | ||
| - conda-forge::r-plyr==1.8.4 | ||
| - bioconda::samtools==1.9=h8571acd_11 | ||
| - bioconda::strelka==2.9.10 | ||
| - bioconda::bioconductor-variantannotation==1.28.3 | ||
| - pindel==0.2.5b9 | ||
| - macs2==2.1.2 | ||
| - r-dplyr==0.8.5 | ||
| - bioconda::pindel==0.2.5b9 | ||
| - bioconda::macs2==2.1.2 | ||
| - conda-forge::r-dplyr==0.8.5 | ||
| - bioconda::bioconductor-genomicalignments==1.18.1 | ||
| - bedtools==2.29.2 | ||
| - varscan==2.4.4 | ||
| - bioconda::bedtools==2.29.2 | ||
| - bioconda::varscan==2.4.4 | ||
| - bioconda::bioconductor-rtracklayer==1.42.1 | ||
| - conda-forge::coreutils==8.31 | ||
| - conda-forge::sed==4.8 | ||
| - conda-forge::bash==5.0.018 | ||
| - conda-forge::gzip==1.10 |