Major
-
Add option for 'fast' run (
-f / --fast
) with 4 ML models (instead of the default 6 models) -
Add option (
-m
) to explicitly specify the supervised models to be trained by mantis-ml.
Available model options are:- et: Extra Trees
- rf: Random Forest
- gb: Gradient Boosting
- xgb: XGBoost
- svc: Support Vector Classifier
- dnn: Deep Neural Net
- stack: Stacking classifier
Multiple models may be specified using a ',' separator, e.g.
-m et,rf,stack
-
Stacking classifier may now be run using the
-m
option with thestack
arg, i.e.:-m stack
Minor
- Fix bug in
hypergeom_enrichment
module when reading external ranked files (only tab-delimiter is currently allowed in case of an external file with two columns)