Model for unmyelinated axon segmentation in TEM images, based on nnUNetv2.
TODO image and description
To use the checkpoints provided in this repository, please see this temporary solution: https://github.com/axondeepseg/nn-axondeepseg.
The datasets can be found in the NeuroPoly internal data server. Look for datasets/data_axondeepseg_sickkids and data_axondeepseg_stanford.
TODO show how to use script to preprocess data
For more detailed information on the training pipelines, see the sickkids_pipeline and stanford_pipeline folders.