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GynC.jl

Build Status codecov.io

This package provides the toolchain to estimate the parameters of the GynCycle model.

Its code mainly revolves around the three main types:

  • Config which stores the bayesian model configuration, i.e. the patient data, measurement error, priors, ... as well as the MCMC proposal density and the thinning.
  • Sampling which is obtained by sampling from a config via sample(::Config, iters) containing the sampled points, the current sampler state, as well as a reference to its initial config.
  • WeightedChain which can be constructed from multiple samplings via WeightedChain(::Vector{Sampling}) representing the average/merged chain and is used for further prior estimation steps, for example the EM-iteration: emiteration!(::WeightedChain)