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format references
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axsk committed Dec 12, 2023
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2 changes: 1 addition & 1 deletion .gitignore
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*.jl.*.cov
*.jl.cov
*.jl.mem
/Manifest.toml
Manifest.toml
/docs/build/
8 changes: 4 additions & 4 deletions README.md
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Expand Up @@ -17,7 +17,7 @@ P=rand(10,10)
P = P ./ sum(P, dims=2) # row stochastic matrix

# basic PCCA+ clustering with 2 clusters (using no weighting and the ISA initial guess only)
chi = pcca(P, 2) #
chi = pcca(P, 2)

using KrylovKit
using SparseArrays
Expand All @@ -32,6 +32,6 @@ chi = pcca(P, 2; pi=:stationary, optimize=true, solver=KrylovSolver())
For sparse matrix support, add either the `ArnoldiMethod.jl` or `KrylovKit.jl` and pass the corresponding `ArnoldiSolver()` or `KrylovSolver()` as a solver.

## References
1. 2006, M. Weber: Meshless Methods in Conformation Dynamics
2. 2013, S. Röblitz, M. Weber: Fuzzy Spectral Clustering by PCCA+
3. 2018, K. Fackeldey, A. Sikorski, M. Weber: Spectral Clustering for Non-Reversible Markov Chains
1. [2006, M. Weber: Meshless Methods in Conformation Dynamics](https://opus4.kobv.de/opus4-zib/frontdoor/deliver/index/docId/1023/file/promotionweber.pdf)
2. [2013, S. Röblitz, M. Weber: Fuzzy Spectral Clustering by PCCA+](https://doi.org/10.1007/s11634-013-0134-6)
3. [2018, K. Fackeldey, A. Sikorski, M. Weber: Spectral Clustering for Non-Reversible Markov Chains](https://doi.org/10.1007/s40314-018-0697-0)

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