Current version can: -download from sra -download STAR_index from dobin's repo -Align using STAR (needs >30GB of RAM)
needs conda and snakemake to run
conda install -c bioconda snakemake
to run
snakemake --use-conda -c all
you can adjust the config file to change the accession entries in the given format
accession:
- SRR1
- SRR2
- etc
Currently maintained by BMGlab