diff --git a/run_apobec.ipynb b/run_apobec.ipynb index 9bd36a0..2235896 100644 --- a/run_apobec.ipynb +++ b/run_apobec.ipynb @@ -66,10 +66,56 @@ }, { "cell_type": "code", - "execution_count": null, + "execution_count": 11, "metadata": {}, - "outputs": [], - "source": [] + "outputs": [ + { + "name": "stdout", + "output_type": "stream", + "text": [ + "\n", + " ---------------\n", + " job started at 2022-05-30 17:01:40 ...\n", + " ---------------\n", + " \n" + ] + }, + { + "data": { + "application/vnd.jupyter.widget-view+json": { + "model_id": "9a8efbf703f24b6c8211719b771f591d", + "version_major": 2, + "version_minor": 0 + }, + "text/plain": [ + "IntProgress(value=0, bar_style='success', max=1)" + ] + }, + "metadata": {}, + "output_type": "display_data" + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "\n", + " \n", + " file processed: 1\n", + " time taken: 0.0 hours 0.0 minutes 0 seconds\n", + " \n", + " the results are in the folder 'output_apobec'\n", + " \n", + " ---------------\n", + " ... job finished at 2022-05-30 17:01:41\n", + " ---------------\n", + " \n", + " \n" + ] + } + ], + "source": [ + "%run -m apobec.count_cg_to_ta" + ] }, { "cell_type": "code",