Created iSoM Wiki

.gitignore

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+.Rproj.user
+.Rhistory
+.RData
+.Ruserdata

01-Overview.Rmd

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+# Overview
+
+## Summary 
+
+Interoceptive Sensations of Motherhood (iSoM) Wiki
+
+## Aims
+
+
+## Background
+
+iSoM is the in-person follow-up study to Sensations of Motherhood (SoM).
+
+Currently, the primary aim of the study is to collect pilot data for a grant application.

02-Pilot-Study.Rmd

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+# Pilot Study
+
+## Pilot Overview 
+
+**Overview of Piloting Aims/Goals**
+
+## Pilot Details
+
+[INSERT PILOTING DETAILS HERE]
+
+## Questionnaires
+
+- **Demographics**
+  - BAB Lab
+
+- **Childhood Trauma Questionnaire**
+  - Pennebaker, J. W., & Susman, J. R. (1988). Disclosure of traumas and psychosomatic processes. Social science & medicine, 26(3), 327-332.
+
+- **Edinburgh Postnatal Depression Scale**
+  - Cox, J. L., Holden, J. M., & Sagovsky, R. (1987). Detection of postnatal depression: development of the 10-item Edinburgh Postnatal Depression Scale.The British journal of psychiatry,150(6), 782-786.
+
+- **Interoceptive Accuracy Scale (IAS)**
+  - Murphy, J., Brewer, R., Plans, D., Khalsa, S. S., Catmur, C., & Bird, G. (2020). Testing the independence of self-reported interoceptive accuracy and attention. Quarterly Journal of Experimental Psychology, 73(1), 115-133.
+
+- **Multidimensional Assessment of Interoceptive Awareness 2 (MAIA-2)**
+  - Mehling WE, Acree M, Stewart A, Silas J, Jones A (2018) The Multidimensional Assessment of Interoceptive Awareness, Version 2 (MAIA-2). PLoS ONE 13(12): e0208034.
+
+
+## Funding
+Start-up Funds

03-Data-Collection.Rmd

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+# Data Collection
+
+## Location
+All research is conducted in-person at UCLA.
+
+## HBD Task
+[Details of HBD Task/Device]
+
+## Data Storage
+Box. Details to follow.
+
+
+

DESCRIPTION

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+Package: placeholder
+Type: Book
+Title: Does not matter.
+Version: 0.0.1
+Imports: bookdown
+Remotes: rstudio/bookdown

Dockerfile

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+FROM conoria/alpine-r-bookdown
+
+WORKDIR /usr/src
+
+COPY . .
+
+RUN R -q -e 'bookdown::render_book("index.Rmd", "bookdown::gitbook")' && mv _book /public

LICENSE

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+CC0 1.0 Universal
+
+Statement of Purpose
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+

README.md

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+

_bookdown.yml

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+book_filename: "wiki_SoM"
+language:
+  ui:
+    chapter_name: "Section "
+delete_merged_file: true
+output_dir: "docs"

_build.sh

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+#!/bin/sh
+
+set -ev
+
+Rscript -e "bookdown::render_book('index.Rmd', 'bookdown::gitbook')"
+Rscript -e "bookdown::render_book('index.Rmd', 'bookdown::pdf_book')"
+Rscript -e "bookdown::render_book('index.Rmd', 'bookdown::epub_book')"
+

_deploy.sh

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+#!/bin/sh
+
+set -e
+
+[ -z "${GITHUB_PAT}" ] && exit 0
+[ "${TRAVIS_BRANCH}" != "master" ] && exit 0
+
+git config --global user.email "xie@yihui.name"
+git config --global user.name "Yihui Xie"
+
+git clone -b gh-pages https://${GITHUB_PAT}@github.com/${TRAVIS_REPO_SLUG}.git book-output
+cd book-output
+cp -r ../_book/* ./
+git add --all *
+git commit -m"Update the book" || true
+git push -q origin gh-pages

_output.yml

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+bookdown::gitbook:
+  css: style.css
+  config:
+    toc: 
+      before: |
+        <li><a href="./">wiki_SoM</a></li>
+      after: |
+        <li><a href="https://brainandbodylab.psych.ucla.edu/" target="blank">BABLab at UCLA</a></li>
+        <li><a href="https://github.com/rstudio/bookdown" target="blank">Published with bookdown</a></li>
+    edit: https://github.com/rstudio/bookdown-demo/edit/master/%s
+    download: ["pdf", "epub"]
+bookdown::pdf_book:
+  includes:
+    in_header: preamble.tex
+  latex_engine: xelatex
+  citation_package: natbib
+  keep_tex: yes
+bookdown::epub_book: default

book.bib

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+@Book{xie2015,
+  title = {Dynamic Documents with {R} and knitr},
+  author = {Yihui Xie},
+  publisher = {Chapman and Hall/CRC},
+  address = {Boca Raton, Florida},
+  year = {2015},
+  edition = {2nd},
+  note = {ISBN 978-1498716963},
+  url = {http://yihui.name/knitr/},
+}
+
+@Article{callaghanMindGutAssociations2020a,
+  title = {Mind and Gut: {{Associations}} between Mood and Gastrointestinal Distress in Children Exposed to Adversity},
+  shorttitle = {Mind and Gut},
+  author = {Callaghan, Bridget L. and Fields, Andrea and Gee, Dylan G. and {Gabard-Durnam}, Laurel and Caldera, Christina and Humphreys, Kathryn L. and Goff, Bonnie and Flannery, Jessica and Telzer, Eva H. and Shapiro, Mor and Tottenham, Nim},
+  year = {2020},
+  month = feb,
+  volume = {32},
+  pages = {309--328},
+  issn = {1469-2198},
+  doi = {10.1017/S0954579419000087},
+  abstract = {Gastrointestinal and mental disorders are highly comorbid, and animal models have shown that both can be caused by early adversity (e.g., parental deprivation). Interactions between the brain and bacteria that live within the gastrointestinal system (the microbiome) underlie adversity-gastrointestinal-anxiety interactions, but these links have not been investigated during human development. In this study, we utilized data from a population of 344 youth (3-18 years old) who were raised with their biological parents or were exposed to early adverse caregiving experiences (i.e., institutional or foster care followed by international adoption) to explore adversity-gastrointestinal-anxiety associations. In Study 1, we demonstrated that previous adverse care experiences were associated with increased incidence of gastrointestinal symptoms in youth. Gastrointestinal symptoms were also associated with concurrent and future anxiety (measured across 5 years), and those gastrointestinal symptoms mediated the adversity-anxiety association at Time 1. In a subsample of children who provided both stool samples and functional magnetic resonance imaging of the brain (Study 2, which was a "proof-of-principle"), adversity was associated with changes in diversity (both alpha and beta) of microbial communities, and bacteria levels (adversity-associated and adversity-independent) were correlated with prefrontal cortex activation to emotional faces. Implications of these data for supporting youth mental health are discussed.},
+  file = {/Users/emily/Zotero/storage/2QGUY52T/Callaghan et al. - 2020 - Mind and gut Associations between mood and gastro.pdf},
+  journal = {Development and Psychopathology},
+  keywords = {anxiety,development,functional magnetic resonance imaging,gastrointestinal distress,microbiome},
+  language = {eng},
+  number = {1},
+  pmcid = {PMC6765443},
+  pmid = {30919798}
+}