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Moving optimisation code into Tree impl Cargo Build & Test #60: Commit be110b7 pushed by jhellewell14
February 26, 2024 11:26 1m 25s main
main
February 26, 2024 11:26 1m 25s
Fixing clippy suggestions Cargo Build & Test #59: Commit fc450d4 pushed by jhellewell14
February 26, 2024 08:50 1m 7s main
main
February 26, 2024 08:50 1m 7s
Merge pull request #1 from bacpop/phyml_test Cargo Build & Test #58: Commit b1e4584 pushed by jhellewell14
February 23, 2024 10:41 1m 8s main
main
February 23, 2024 10:41 1m 8s
Resolve conflicts with moving main to lib Cargo Build & Test #57: Commit f3ae9b2 pushed by johnlees
February 23, 2024 10:39 59s phyml_test
phyml_test
February 23, 2024 10:39 59s
Fix the phyml command (correct number of rates) Cargo Build & Test #56: Commit 6570025 pushed by johnlees
February 23, 2024 10:27 1m 5s phyml_test
phyml_test
February 23, 2024 10:27 1m 5s
Moving back to optimisation algorithm Cargo Build & Test #55: Commit 6378788 pushed by jhellewell14
February 23, 2024 09:59 34s main
main
February 23, 2024 09:59 34s
Another copied comment that was wrong Cargo Build & Test #54: Commit 2178b96 pushed by johnlees
February 23, 2024 09:55 1m 3s phyml_test
phyml_test
February 23, 2024 09:55 1m 3s
Tidy some of the options Cargo Build & Test #53: Commit 7fb37b6 pushed by johnlees
February 23, 2024 09:49 1m 1s phyml_test
phyml_test
February 23, 2024 09:49 1m 1s
Fix CI step name Cargo Build & Test #52: Commit a694462 pushed by johnlees
February 23, 2024 09:47 1m 5s phyml_test
phyml_test
February 23, 2024 09:47 1m 5s
Fix yaml Cargo Build & Test #51: Commit 4f053af pushed by johnlees
February 23, 2024 09:44 1m 6s phyml_test
phyml_test
February 23, 2024 09:44 1m 6s
Add phyml to CI Cargo Build & Test #50: Commit 55b5566 pushed by johnlees
February 23, 2024 09:42 Failure phyml_test
phyml_test
February 23, 2024 09:42 Failure
Add the fasta input for the test Cargo Build & Test #49: Commit a0befcf pushed by johnlees
February 23, 2024 09:38 55s phyml_test
phyml_test
February 23, 2024 09:38 55s
Remove quotes around newick Cargo Build & Test #48: Commit 420025e pushed by johnlees
February 22, 2024 17:26 51s phyml_test
phyml_test
February 22, 2024 17:26 51s
Skeleton of phyml test Cargo Build & Test #47: Commit 160adc7 pushed by johnlees
February 22, 2024 17:19 49s phyml_test
phyml_test
February 22, 2024 17:19 49s
Likelihood now gives the same value as PhyML for the full listeria da… Cargo Build & Test #46: Commit a7b38be pushed by jhellewell14
February 20, 2024 13:32 48s main
main
February 20, 2024 13:32 48s
Added constant values for A,C,G,T characters and updated value for mi… Cargo Build & Test #45: Commit c77843e pushed by jhellewell14
February 19, 2024 09:35 38s main
main
February 19, 2024 09:35 38s
Newick string code now includes branch lengths Cargo Build & Test #44: Commit 6571acb pushed by jhellewell14
February 14, 2024 16:05 44s main
main
February 14, 2024 16:05 44s
Needed to use log_sum_exp function in final likelihood calculation. O… Cargo Build & Test #43: Commit 9431cd3 pushed by jhellewell14
February 14, 2024 14:44 36s main
main
February 14, 2024 14:44 36s
Added the R code to the test Cargo Build & Test #42: Commit 1346572 pushed by jhellewell14
February 13, 2024 11:03 34s main
main
February 13, 2024 11:03 34s
Wrote a test for newick strings that checks what the children should … Cargo Build & Test #41: Commit 7cef78f pushed by jhellewell14
February 13, 2024 11:02 36s main
main
February 13, 2024 11:02 36s
Moved to Felsenstein likelihood, now need to write tests Cargo Build & Test #40: Commit 4ccdd2b pushed by jhellewell14
January 24, 2024 10:14 36s main
main
January 24, 2024 10:14 36s
old data format Cargo Build & Test #39: Commit c4f9023 pushed by jhellewell14
January 18, 2024 11:46 50s old_mutation_format
old_mutation_format
January 18, 2024 11:46 50s
saving old data format here before moving to representating all sites… Cargo Build & Test #38: Commit 7c1aa49 pushed by jhellewell14
January 18, 2024 11:45 43s main
main
January 18, 2024 11:45 43s
last commit before moving to Felsenstein's likelihood Cargo Build & Test #37: Commit 436f063 pushed by jhellewell14
January 18, 2024 11:44 41s main
main
January 18, 2024 11:44 41s
Added a test to check that the log likelihood value produced for very… Cargo Build & Test #36: Commit 41ec716 pushed by jhellewell14
January 15, 2024 11:02 39s main
main
January 15, 2024 11:02 39s