Rework upsert statement builder: more robust, more efficient, support… #209

	name: documentation

	on: [push, pull_request, workflow_dispatch]

	permissions:
	contents: write

	jobs:
	docs:
	runs-on: ubuntu-latest
	if: ${{ github.event_name == 'push' && github.ref == 'refs/heads/main' }}
	steps:
	- uses: actions/checkout@v4
	with:
	fetch-depth: 0
	- uses: actions/setup-python@v4
	with:
	python-version: 3.11
	- name: Get pip cache dir
	id: pip-cache
	run: \|
	echo "::set-output name=dir::$(pip cache dir)"
	- name: Cache Dependencies for Python
	uses: 'actions/cache@v4'
	with:
	path: ${{ steps.pip-cache.outputs.dir }}
	id: cache
	key: ${{ runner.os }}-pip-${{ hashFiles('src/requirements/**.txt') }}
	restore-keys: \|
	${{ runner.os }}-pip-
	${{ runner.os }}-
	- name: Setup dependencies
	if: steps.cache.outputs.cache-hit != 'true'
	run: \|
	python -m pip install --upgrade pip
	pip install -r src/requirements/dev.txt
	pip install .
	pip install -r src/requirements/docs.txt
	- name: Sphinx build
	run: \|
	sphinx-apidoc --implicit-namespaces --separate -H "API Reference" -fo docs/biodm/ src/biodm "*/tests*"
	python3 -m sphinx -b html docs/ _build/
	- name: Deploy to GitHub Pages
	uses: peaceiris/actions-gh-pages@v4
	# If we need to make it a requirement some day.
	# For now it is a little unecessary.
	# if: ${{ github.event_name == 'push' && github.ref == 'refs/heads/main' }}
	with:
	publish_branch: gh-pages
	github_token: ${{ secrets.GITHUB_TOKEN }}
	publish_dir: _build/
	force_orphan: true

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