fix sqlite install #197
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| name: CI | |
| on: [push] | |
| jobs: | |
| build: | |
| runs-on: ubuntu-latest | |
| strategy: | |
| matrix: | |
| python-version: ["3.11", "3.12"] | |
| steps: | |
| - uses: actions/checkout@v4 | |
| with: | |
| fetch-depth: 0 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Get pip cache dir | |
| id: pip-cache | |
| run: | | |
| echo "::set-output name=dir::$(pip cache dir)" | |
| - name: Cache Dependencies for Python | |
| uses: actions/cache@v4 | |
| with: | |
| path: ${{ steps.pip-cache.outputs.dir }} | |
| key: ${{ runner.os }}-pip-${{ hashFiles('src/requirements/**.txt') }} | |
| restore-keys: | | |
| ${{ runner.os }}-pip- | |
| - name: Setup dependencies | |
| if: steps.cache.outputs.cache-hit != 'true' | |
| run: | | |
| pip install -r src/requirements/dev.txt | |
| pip install . | |
| - name: dl sqlite | |
| run: | | |
| wget https://github.com/sqlite/sqlite/archive/refs/tags/version-3.40.1.tar.gz | |
| tar -xvf version-3.40.1.tar.gz | |
| - name: install sqlite | |
| run: | | |
| ./configure | |
| make | |
| sudo make install | |
| export PATH="/usr/local/lib:$PATH" | |
| working-directory: sqlite-version-3.40.1/ | |
| - name: Run unit tests | |
| run: | | |
| python -m pytest | |
| working-directory: src/tests/unit | |
| env: | |
| LD_LIBRARY_PATH: /usr/local/lib | |
| - name: Analysing the code with pylint | |
| run: | | |
| pylint -d W0221 $(git ls-files 'src/biodm/*.py') --exit-zero | |
| # TODO: Debug | |
| # - name: Build and cache integration test images | |
| # uses: whoan/docker-build-with-cache-action@v5 | |
| # with: | |
| # username: ${{ github.actor }} | |
| # password: ${{ secrets.GITHUB_TOKEN }} | |
| # registry: ghcr.io/bag-cnag | |
| # compose_file: compose.test.yml | |
| - name: Build integration tests containers | |
| run: | | |
| docker compose -f compose.test.yml build \ | |
| --build-arg PIP_CACHE_DIR=${{ steps.pip-cache.outputs.dir }} \ | |
| --build-arg PYTHON__V=${{ matrix.python-version }} | |
| - name: Run integration tests - keycloak - | |
| run: | | |
| docker compose -f compose.test.yml run test-keycloak-run | |
| docker compose -f compose.test.yml down --remove-orphans | |
| - name: Run integration tests - s3 - | |
| run: | | |
| docker compose -f compose.test.yml run test-s3-run | |
| docker compose -f compose.test.yml down --remove-orphans |