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@bartongroup

Geoff Barton's Computational Biology Group

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  1. Proteus Proteus Public

    R package for analysing proteomics data

    R 48 3

  2. RATS RATS Public

    Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.

    R 32 1

  3. 2passtools 2passtools Public

    Two pass alignment for long reads

    Python 20 1

  4. AlmostSignificant AlmostSignificant Public

    A server for maintaining high-throughput sequencing QC data

    Python 13

  5. differr_nanopore_DRS differr_nanopore_DRS Public

    Scripts for identifying sites with differential error rates in mapped nanopore DRS data

    Python 11 3

  6. yanocomp yanocomp Public

    Yet another nanopore modification comparison tool

    Python 11 1

Repositories

Showing 10 of 71 repositories
  • d3pendr Public

    Differential 3' end analysis

    bartongroup/d3pendr’s past year of commit activity
    Python 3 2 1 1 Updated Nov 4, 2024
  • LBS-comparison Public

    This is a GitHub Repository containing the data and code used for a thorough comparison of 11 ligand binding site prediction tools

    bartongroup/LBS-comparison’s past year of commit activity
    Jupyter Notebook 6 MIT 1 0 0 Updated Nov 4, 2024
  • ProIntVar Public

    The core bits of ProIntVar

    bartongroup/ProIntVar’s past year of commit activity
    Python 2 MIT 0 8 0 Updated Oct 29, 2024
  • bartongroup/SM_VarAlign’s past year of commit activity
    Python 2 MIT 0 0 0 Updated Oct 25, 2024
  • slivka-bio-docker Public

    Docker Compose configuration for slivka-bio

    bartongroup/slivka-bio-docker’s past year of commit activity
    Dockerfile 2 Apache-2.0 1 0 1 Updated Oct 25, 2024
  • slivka Public
    bartongroup/slivka’s past year of commit activity
    Python 7 Apache-2.0 3 29 (1 issue needs help) 1 Updated Oct 24, 2024
  • bartongroup/slivka-python-client’s past year of commit activity
    Python 2 Apache-2.0 0 1 0 Updated Oct 23, 2024
  • PT_interogate_m6anet_results Public

    Determine exon location of predicted m6a methylation sites

    bartongroup/PT_interogate_m6anet_results’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Oct 9, 2024
  • dexdash Public

    Interactive explorer for differential expression analysis centred on the volcano plot. Features fast functional enrichment.

    bartongroup/dexdash’s past year of commit activity
    R 2 0 0 0 Updated Oct 4, 2024
  • PT_identify_polyA_sites Public

    script to identify polyA start sites in nanopore direct RNAseq data mapped to a genome

    bartongroup/PT_identify_polyA_sites’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Sep 23, 2024

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