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@bcgsc

BC Cancer Canada's Michael Smith Genome Sciences Centre

Sequencing Centre for Genomics and Bioinformatics Research

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  1. RNA-Bloom RNA-Bloom Public

    🌺 reference-free transcriptome assembly for short and long reads

    Java 96 7

  2. LongStitch LongStitch Public

    Correct and scaffold assemblies using long reads

    Makefile 46 7

  3. ntRoot ntRoot Public

    🌳 Human ancestry inference from genomic data

    Python 4

  4. btllib btllib Public

    Bioinformatics Technology Lab common code library

    C++ 23 5

  5. ntEdit ntEdit Public

    ✏️ Genome assembly polishing & SNV detection

    C++ 64 9

  6. goldrush goldrush Public

    Linear-time de novo Long Read Assembler

    C++ 35 2

Repositories

Showing 10 of 116 repositories
  • tAMPer Public

    tAMPer: antimicrobial peptides toxicity prediction

    bcgsc/tAMPer’s past year of commit activity
    Jupyter Notebook 7 GPL-3.0 2 1 0 Updated Nov 9, 2024
  • ntStat Public

    ntStat: a toolkit for statistical analysis of k-mer frequency and depth

    bcgsc/ntStat’s past year of commit activity
    C++ 0 GPL-3.0 0 0 0 Updated Nov 9, 2024
  • pori_ipr_client Public

    Integrated Pipeline Reports (IPR) client. The web interface for the reporting application as part of PORI

    bcgsc/pori_ipr_client’s past year of commit activity
    TypeScript 8 GPL-3.0 1 0 2 Updated Nov 8, 2024
  • pori_python Public
    bcgsc/pori_python’s past year of commit activity
    Python 0 GPL-3.0 1 1 1 Updated Nov 8, 2024
  • pori_ipr_api Public

    Integrated Pipeline Reports (IPR) API, the reporting API as part of the PORI platform

    bcgsc/pori_ipr_api’s past year of commit activity
    JavaScript 8 0 0 3 Updated Nov 7, 2024
  • ntRoot Public

    🌳 Human ancestry inference from genomic data

    bcgsc/ntRoot’s past year of commit activity
    Python 4 GPL-3.0 0 0 0 Updated Nov 7, 2024
  • pori_graphkb_loader Public

    The Loaders for GraphKB. Imports content from external sources via the GraphKB REST API

    bcgsc/pori_graphkb_loader’s past year of commit activity
    JavaScript 6 GPL-3.0 4 12 3 Updated Nov 7, 2024
  • ntEdit Public

    ✏️ Genome assembly polishing & SNV detection

    bcgsc/ntEdit’s past year of commit activity
    C++ 64 GPL-3.0 9 0 0 Updated Nov 6, 2024
  • btllib Public

    Bioinformatics Technology Lab common code library

    bcgsc/btllib’s past year of commit activity
    C++ 23 5 24 (1 issue needs help) 5 Updated Nov 6, 2024
  • arcs Public

    🌈Scaffold genome sequence assemblies using linked or long read sequencing data

    bcgsc/arcs’s past year of commit activity
    C++ 91 GPL-3.0 16 0 0 Updated Nov 6, 2024
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