Merge pull request #1 from bcgsc/feature/fix-typo

Fix spelling error in generating statement templates
bcgsc · Jan 19, 2021 · bfc1e7d · bfc1e7d
2 parents f769ed7 + aaea21d
commit bfc1e7d
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Showing 2 changed files with 4 additions and 4 deletions.
diff --git a/src/sentenceTemplates.js b/src/sentenceTemplates.js
@@ -27,7 +27,7 @@ const DEFAULT_TEMPLATE = `Given ${
 const chooseDefaultTemplate = (record) => {
     const conditionTypes = record.conditions.map(c => c['@class'].toLowerCase());
     const multiVariant = conditionTypes.filter(t => t.endsWith('variant')).length > 1
-        ? 'Co-occurence of '
+        ? 'Co-occurrence of '
         : '';
     const hasVariant = conditionTypes.some(t => t.endsWith('variant'));
     const hasDisease = conditionTypes.includes('disease');

diff --git a/test/sentenceTemplates.test.js b/test/sentenceTemplates.test.js
@@ -14,7 +14,7 @@ describe('generateStatementSentence', () => {
 
         test('multiple variants predict prognosis in disease', () => {
             const key = 'subject:Vocabulary|conditions:Disease;PositionalVariant;PositionalVariant;Vocabulary|relevance:favourable prognosis';
-            const result = 'Co-occurence of chr19:y.qcopyloss, and chr1:y.pcopyloss predicts favourable prognosis in anaplastic oligodendroglioma [C4326]';
+            const result = 'Co-occurrence of chr19:y.qcopyloss, and chr1:y.pcopyloss predicts favourable prognosis in anaplastic oligodendroglioma [C4326]';
             const { content } = generateStatementSentence(schemaDefn, examples[key]);
             expect(content.replace(' ({evidence})', '')).toEqual(result);
         });
@@ -58,15 +58,15 @@ describe('generateStatementSentence', () => {
 
         test('multiple variants result in sensitivity to therapy', () => {
             const key = 'subject:Therapy|conditions:Disease;PositionalVariant;PositionalVariant;Therapy|relevance:sensitivity';
-            const result = 'Co-occurence of KIT:p.V560D, and KIT:p.D820G is associated with sensitivity to imatinib [DB00619] in gastrointestinal stromal tumor [C3868]';
+            const result = 'Co-occurrence of KIT:p.V560D, and KIT:p.D820G is associated with sensitivity to imatinib [DB00619] in gastrointestinal stromal tumor [C3868]';
             const { content } = generateStatementSentence(schemaDefn, examples[key]);
             expect(content.replace(' ({evidence})', '')).toEqual(result);
         });
     });
 
     describe('functional effects', () => {
         test('co-occuring variants result in tumourigenesis', () => {
-            const result = 'Co-occurence of PARK2 copy loss, and APC mutation contributes to tumourigenesis of colorectal cancer';
+            const result = 'Co-occurrence of PARK2 copy loss, and APC mutation contributes to tumourigenesis of colorectal cancer';
             const input = {
                 conditions: [
                     {