Upload screenshot #1
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: Tests | ||
| on: | ||
| pull_request: | ||
| push: | ||
| branches: [main, test] | ||
| jobs: | ||
| pre-commit: | ||
| name: Lint | ||
| runs-on: ubuntu-latest | ||
| steps: | ||
| - name: Cancel Previous Runs | ||
| uses: styfle/cancel-workflow-action@0.11.0 | ||
| with: | ||
| access_token: ${{ github.token }} | ||
| - uses: actions/checkout@v3 | ||
| - uses: actions/setup-python@v4 | ||
| with: | ||
| python-version: '3.11' | ||
| - uses: pre-commit/action@v3.0.0 | ||
| test: | ||
| name: Python | ||
| runs-on: ${{ matrix.os }} | ||
| strategy: | ||
| fail-fast: false | ||
| matrix: | ||
| python: [ "3.11" ] | ||
| os: [ ubuntu-latest, ] | ||
| defaults: | ||
| run: | ||
| shell: bash | ||
| steps: | ||
| - name: Cancel Previous Runs | ||
| uses: styfle/cancel-workflow-action@0.10.0 | ||
| with: | ||
| access_token: ${{ github.token }} | ||
| - name: Checkout | ||
| uses: actions/checkout@v3 | ||
| - uses: actions/setup-python@v4 | ||
| with: | ||
| python-version: '3.11' | ||
| cache: 'pip' | ||
| - name: Install deps | ||
| run: pip install -r requirements.txt | ||
| - name: Tests with numba | ||
| run: coverage run --source=tsbrowse -m pytest -x tests | ||
| - name: Tests with coverage (no numba) | ||
| run: TSBROWSE_DISABLE_NUMBA=1 coverage run --source=tsbrowse -m pytest -x tests | ||
| - name: Create Screenshot | ||
| run: | | ||
| msp simulate --length 1000 --recombination-rate 0.01 --mutation-rate 0.01 100 out.trees | ||
| python -m tsbrowse preprocess out.trees | ||
| python -m tsbrowse screenshot out.tsbrowse mutations | ||
| - name: Upload Screenshot Artifact | ||
| uses: actions/upload-artifact@v3 | ||
| with: | ||
| name: screenshots | ||
| path: *.png | ||
| - name: Upload coverage | ||
| env: | ||
| GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | ||
| run: | | ||
| coveralls --service=github | ||
