Skip to content
@berenslab

Berens Lab @ University of Tübingen

Department of Data Science at the Hertie Institute for AI in Brain Health, University of Tübingen

Popular repositories Loading

  1. rna-seq-tsne rna-seq-tsne Public

    The art of using t-SNE for single-cell transcriptomics

    Jupyter Notebook 120 34

  2. t-simcne t-simcne Public

    Unsupervised visualization of image datasets using contrastive learning

    Python 114 13

  3. pubmed-landscape pubmed-landscape Public

    The landscape of biomedical research

    Jupyter Notebook 113 9

  4. neural_data_science neural_data_science Public

    Contains programming labs and lecture notes for the lecture "Neural Data Science"

    Jupyter Notebook 97 23

  5. uneye uneye Public

    Deep neural network for eye movement detection

    Jupyter Notebook 73 30

  6. contrastive-ne contrastive-ne Public

    Contrastive neighbor embeddings

    Jupyter Notebook 51 6

Repositories

Showing 10 of 71 repositories
  • retinal-rl Public

    Testing theories about retinal coding in reinforcement learning environments

    berenslab/retinal-rl’s past year of commit activity
    Python 0 AGPL-3.0 1 0 0 Updated Sep 19, 2024
  • disentangling-retinal-images Public

    This repository contains the code for the paper "Disentangling representations of retinal images with generative models".

    berenslab/disentangling-retinal-images’s past year of commit activity
    Python 0 0 0 0 Updated Sep 19, 2024
  • retimgtools Public

    Web-based tools for retinal image annotation and evaluation.

    berenslab/retimgtools’s past year of commit activity
    Python 1 0 0 0 Updated Aug 27, 2024
  • RFEst Public

    A Python 3 toolbox for neural receptive field estimation using splines and Gaussian priors.

    berenslab/RFEst’s past year of commit activity
    Python 24 GPL-3.0 3 4 (1 issue needs help) 0 Updated Aug 20, 2024
  • medical-t-simcne Public

    This repository contains the codes to train a t-SimCNE model. This model has been shown to produce good representations on natural and medical images.

    berenslab/medical-t-simcne’s past year of commit activity
    Python 2 1 0 0 Updated Aug 12, 2024
  • hh_sbi Public
    berenslab/hh_sbi’s past year of commit activity
    Jupyter Notebook 1 GPL-3.0 0 0 0 Updated Aug 5, 2024
  • elephant-in-the-room Public

    Companion repository to our Lause, Berens & Kobak (2024) preprint "The art of seeing the elephant in the room: 2D embeddings of single-cell data do make sense" (bioRxiv)

    berenslab/elephant-in-the-room’s past year of commit activity
    Jupyter Notebook 5 GPL-3.0 0 0 0 Updated Jul 31, 2024
  • dependence-measures-medical-imaging Public

    This repository contains the code for the paper "Benchmarking Dependence Measures to Prevent Shortcut Learning in Medical Imaging".

    berenslab/dependence-measures-medical-imaging’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Jul 26, 2024
  • read-normalization Public

    Companion repository to our Lause et al. (2023) preprint "Compound models and Pearson residuals for normalization of single-cell RNA-seq data without UMIs" (bioRxiv))

    berenslab/read-normalization’s past year of commit activity
    Jupyter Notebook 3 GPL-3.0 0 0 0 Updated Jul 26, 2024
  • MorphoPy Public
    berenslab/MorphoPy’s past year of commit activity
    Jupyter Notebook 34 GPL-3.0 11 1 4 Updated Jul 24, 2024
View all repositories

People

This organization has no public members. You must be a member to see who’s a part of this organization.

Top languages

Loading…

Most used topics

Loading…