This repository contains the notebooks for the exercise sessions of the VIB Deep Learning for Biology workshop.
You can try out these exercises by uploading them to Google Colab. Alternatively, you can also run them locally by running the instructions below. Please keep in mind that the exercises can be time-consuming without a CUDA capable device.
Follow these instruction if you want to run the notebooks contained in this repository.
Start by creating a Python 3 environment with conda, pipenv, virtualenv ...
conda create -n deep-learning-biology python=3
conda activate deep-learning-biology
Install the dependencies with pip:
pip install -r requirements.txt
cd into the assignments directory and start jupyter lab to solve the exercises:
cd deep-learning-biology/exercises/assignments
jupyter lab