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  1. ascets ascets Public

    This repository contains the code to run the ASCETS arm-level copy number events caller for targeted sequencing data. ASCETS produces arm-level copy-number variant calls and arm-level weighted aver…

    R 14 1

  2. BISCUT-py3 BISCUT-py3 Public

    Python 9 5

  3. GaTSV GaTSV Public

    R 2

  4. SVsig SVsig Public

    MATLAB 1 1

  5. GATK_CN_CWL GATK_CN_CWL Public

    Implementation of the GATK copy number pipeline in CWL (ported from WDL)

    Common Workflow Language 1

  6. oncoprint-template oncoprint-template Public

    Template Code for OncoPrint

    R

Repositories

Showing 10 of 13 repositories
  • TangentXY Public

    An extension of the Tangent method that allows for improved normalization of the sex chromosomes.

    beroukhim-lab/TangentXY’s past year of commit activity
    R 0 0 0 0 Updated Oct 14, 2024
  • GaTSV Public
    beroukhim-lab/GaTSV’s past year of commit activity
    R 2 GPL-2.0 0 0 0 Updated Aug 7, 2024
  • SVsig Public
    beroukhim-lab/SVsig’s past year of commit activity
    MATLAB 1 AGPL-3.0 1 0 0 Updated Jul 22, 2024
  • TangentXY_scripts Public
    beroukhim-lab/TangentXY_scripts’s past year of commit activity
    R 0 0 0 0 Updated Jul 15, 2024
  • gatk4-data-processing Public Forked from gatk-workflows/gatk4-data-processing

    Workflows for processing high-throughput sequencing data for variant discovery with GATK4 and related tools

    beroukhim-lab/gatk4-data-processing’s past year of commit activity
    WDL 0 BSD-3-Clause 75 0 0 Updated Jun 7, 2024
  • BISCUT-py3 Public
    beroukhim-lab/BISCUT-py3’s past year of commit activity
    Python 9 5 3 1 Updated Apr 25, 2024
  • ancestry_manuscript_code Public
    beroukhim-lab/ancestry_manuscript_code’s past year of commit activity
    Jupyter Notebook 0 GPL-2.0 0 0 0 Updated Apr 25, 2024
  • gistic_reference Public
    beroukhim-lab/gistic_reference’s past year of commit activity
    MATLAB 0 0 0 0 Updated Mar 27, 2024
  • ascets Public

    This repository contains the code to run the ASCETS arm-level copy number events caller for targeted sequencing data. ASCETS produces arm-level copy-number variant calls and arm-level weighted average log2 segment means from segmented copy number data.

    beroukhim-lab/ascets’s past year of commit activity
    R 14 GPL-2.0 1 0 0 Updated Jan 31, 2024
  • ccnu_prism Public

    Repository for all of the analysis for the CCNU project

    beroukhim-lab/ccnu_prism’s past year of commit activity
    0 0 0 0 Updated Jul 28, 2023
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