quant-condensate

Cluster analysis for Courchaine et al, 2020

Prereq's:

Install Python 3.6 using miniconda or anaconda
Install python-microscopy environment (instructions at http://python-microscopy.org), noting that we're behind on python3 packaging
Make sure you have scipy>=1.3 installed.
Clone this repository and install via setuptools (run python setup.py develop or python setup.py install in the top directory)
Register the plugin modules with PYME by running "python quant_condensate/install_plugin.py", again from the top directory