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  • University of Maryland School of Medicine
  • MD, USA

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@tskit-dev @umb-oconnorgroup

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  1. ishare ishare Public

    a Rust crate designed to facilitate the analysis of rare-variant sharing and identity-by-descent (IBD) sharing.

    Rust 3

  2. snp_call_nf snp_call_nf Public

    Nextflow pipeline for plasmodium SNP calling

    Nextflow 3 3

  3. tskibd tskibd Public

    Calculate IBD segments from tree sequence using tskit C API

    C++ 1

  4. posseleff_simulations posseleff_simulations Public

    Nextflow pipeline to assess the impact of positive selection on Identity by Descent (IBD)-based inferences, utilizing population genetic simulations and true IBD inferences.

    Python 1

  5. ibdutils ibdutils Public

    A python package to facilitate identity-by-descent-based analysis

    Python 1

  6. umb-oconnorgroup/ibdtools umb-oconnorgroup/ibdtools Public

    A cpp library/tool set for working with large identity-by-descent files

    C++