v0.1

Following tools are supported:

scFilterBarcodes      Identify and filter cell barcodes from BAM file (for droplet-based single-cell seq)
scFilterStats             Produce per-cell statistics after filtering reads by user-defined criteria.
scCountReads         Counts reads for each barcode on genomic bins or user-defined features.
scCountQC              Perform quality control and filter the output of scCountReads.
scCombineCounts    Concatenate/merge the counts from different samples/batches or modalities
scClusterCells          Perform dimensionality reduction and clustering on the output of scCountReads.
scBulkCoverage       Get pseudo-bulk coverage per group using a user-supplied cell->group mapping (output of scClusterCells).