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deploying BiSpark #3

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cmeesters opened this issue Dec 17, 2018 · 0 comments

cmeesters commented Dec 17, 2018

Dear Developers,

Today I came across your paper in BMC Bioinformatics. As a computational scientist I would very much like to test and deploy BiSpark on our cluster.

For this we would need:

a release, as only release-based installation is what we support for a number of organizational reasons
an option (e.g. command line flag) to specify the reference or scratch directory (on parallel file systems numerous requests to one file or directory (e.g. a bowtie reference) will cause random access and inevitably long run times due to stalls).

Can you please respond to that?

Best regards,
Christian Meesters

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