Extract NIMH Data Archive compatible metadata from Brain Imaging Data Structure (BIDS) compatible datasets
pip install https://github.com/INCF/BIDS2NDA/archive/master.zip
usage: bids2nda [-h] [-v] BIDS_DIRECTORY GUID_MAPPING OUTPUT_DIRECTORY
BIDS to NDA converter.
positional arguments:
BIDS_DIRECTORY Location of the root of your BIDS compatible directory.
GUID_MAPPING Path to a text file with participant_id to GUID mapping.
You will need to use the GUID Tool
(https://ndar.nih.gov/contribute.html) to generate GUIDs
for your participants.
OUTPUT_DIRECTORY Directory where NDA files will be stored.
optional arguments:
-h, --help Show this help message and exit.
The is the file format produced by the GUID Tool, one line per subject in the format:
<participant_id> - <GUID>
See /examples
Column 'experiment_id' must be manually filled in for now.
This is based on experiment IDs received from NDA after setting the study up through the NDA website here.