DESCRIPTION

Package: playbase
Type: Package
Title: Core back-end functionality and logic for OmicsPlayground
Version: 0.1.79
Author: BigOmics Analytics SA
Maintainer: The package maintainer <yourself@somewhere.net>
Description: More about what it does (maybe more than one line)
    Use four spaces when indenting paragraphs within the Description.
License: Dual Commercial and Non-Commercial
Encoding: UTF-8
LazyData: true
Suggests: 
    testthat (>= 3.0.0)
Config/testthat/edition: 3
RoxygenNote: 7.3.2
Depends: 
    R (>= 2.10)
biocViews:
Imports:
    AnnotationDbi,
    AnnotationHub,
    aws.s3,
    base,
    batchelor,
    beeswarm,
    BiocParallel,
    bit64,
    Boruta,
    caret,
    circlize,
    cluster,
    colorspace,
    ComICS,
    ComplexHeatmap,
    corpcor,
    corpora,
    corrplot,
    data.table,
    DeconRNASeq,
    DESeq2,
    doParallel,
    dplyr,
    DT,
    edgeR,
    fastcluster,
    fgsea,
    FNN,
    foreach,
    GenomicRanges,
    GEOquery,
    ggiraph,
    ggplot2,
    ggrepel,
    ggtext,
    glasso,
    glmnet,
    glue,
    GO.db,
    gplots,
    gprofiler2,
    graphics,
    grDevices,
    grid,
    gridExtra,
    GSVA,
    harmony,
    htmlwidgets,
    igraph,
    iheatmapr,
    irlba,
    isva,
    lazyeval,
    limma,
    Matrix,
    matrixStats,
    matrixTests,
    methods,
    microbenchmark,
    missForest,
    mixOmics,
    msa,
    msImpute,
    MSnbase,
    MultiAssayExperiment,
    org.Hs.eg.db,
    org.Mm.eg.db,
    org.Rn.eg.db,
    orthogene,
    pamr,
    parallel,
    partykit,
    pcaMethods,
    plotly,
    plsRcox,
    png,
    ppcor,
    psych,
    purrr,
    qlcMatrix,
    randomForest,
    randomForestSRC,
    RColorBrewer,
    recount,
    reshape2,
    reticulate,
    rhdf5,
    rliger,
    rpart,
    Rtsne,
    ruv,
    RUVSeq,
    scales,
    scatterD3,
    scran,
    Seurat,
    sf,
    shiny,
    SILGGM,
    SingleR,
    stats,
    stringr,
    SummarizedExperiment,
    survival,
    sva,
    TileDBArray,
    umap,
    utils,
    uwot,
    vioplot,
    viridis,
    visNetwork,
    webshot2,
    WGCNA,
    wordcloud,
    xgboost,
Remotes:
    url::https://bioconductor.org/packages/3.11/data/annotation/src/contrib/KEGG.db_3.2.4.tar.gz,
    url::https://bioconductor.org/packages/3.14/data/annotation/src/contrib/org.Pf.plasmo.db_3.14.0.tar.gz,
    url::https://github.com/bigomics/PCSF/archive/HEAD.zip,
    url::https://github.com/bigomics/playdata/archive/HEAD.zip,
    url::https://github.com/broadinstitute/infercnv/archive/refs/tags/infercnv-v1.3.3.zip,
    url::https://github.com/GfellerLab/EPIC/archive/HEAD.zip,
    url::https://github.com/GfellerLab/SuperCell/archive/HEAD.zip,
    url::https://github.com/linxihui/NNLM/archive/HEAD.zip,
    url::https://github.com/satijalab/azimuth/archive/refs/heads/master.zip,