prepare release

bioasp · Aug 27, 2021 · f5c9980 · f5c9980
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diff --git a/CHANGELOG.md b/CHANGELOG.md
@@ -2,6 +2,12 @@
 
 All notable changes to this project will be documented in this file.
 
+## v2.2.0 - 2021, Aug
+
+- improve output/logging
+- add option for JSON output
+- enumerate mics using an iterator
+- use clingo 5.5.0 via clingo-rs 0.7.0
 
 ## v2.1.1 - 2020, Mar 11
 

diff --git a/Cargo.toml b/Cargo.toml
@@ -1,6 +1,6 @@
 [package]
 name = "iggy"
-version = "2.1.1"
+version = "2.2.0"
 authors = ["Sven Thiele <sthiele78@gmail.com>"]
 description = "Influence graph analysis, consistency check, diagnosis, repair and prediction."
 readme = "README.md"

diff --git a/README.md b/README.md
@@ -33,7 +33,7 @@ For more options you can ask for help as follows:
 
 ```txt
 > iggy -h
-iggy 2.1.1
+iggy 2.2.0
 Sven Thiele <sthiele78@gmail.com>
 Iggy confronts interaction graph models with observations of (signed) changes between two measured
 states (including uncertain observations). Iggy discovers inconsistencies in networks or data,
@@ -75,7 +75,7 @@ For more options you can ask for help as follows:
 
 ```txt
 > optgraph -h
-optgraph 2.1.1
+optgraph 2.2.0
 Sven Thiele <sthiele78@gmail.com>
 Optgraph confronts interaction graph models with observations of (signed) changes between two
 measured states. Opt-graph computes networks fitting the observation data by removing (or adding) a
@@ -103,4 +103,4 @@ OPTIONS:
     -m, --repair-mode <repair-mode>
             Repair mode: remove = remove edges (default), optgraph = add + remove edges, flip = flip
             direction of edges
-```
+```
diff --git a/docs/guide/guide.html b/docs/guide/guide.html
@@ -262,7 +262,7 @@
     </head>
     <body for="html-export">
       <div class="mume markdown-preview  ">
-      <h1 class="mume-header" id="iggy-user-guide-version-211">Iggy - User Guide (version 2.1.1)</h1>
+      <h1 class="mume-header" id="iggy-user-guide-version-211">Iggy - User Guide (version 2.2.0)</h1>
 
 <p>Sven Thiele</p>
 <h2 class="mume-header" id="what-are-iggy-and-optgraph">What are <code>iggy</code> and <code>optgraph</code></h2>
@@ -396,7 +396,7 @@ <h2 class="mume-header" id="iggy">Iggy</h2>
 </pre>
 <p>For more options, you can ask for help as follows:</p>
 <pre data-role="codeBlock" data-info="txt" class="language-txt"><code>&gt; iggy -h
-iggy 2.1.1
+iggy 2.2.0
 Sven Thiele &lt;sthiele78@gmail.com&gt;
 Iggy confronts interaction graph models with observations of (signed) changes between two measured
 states (including uncertain observations). Iggy discovers inconsistencies in networks or data,
@@ -691,7 +691,7 @@ <h2 class="mume-header" id="optgraph">Optgraph</h2>
 </pre>
 <p>For more options, you can ask for help as follows:</p>
 <pre data-role="codeBlock" data-info="txt" class="language-txt"><code>&gt; optgraph -h
-optgraph 2.1.1
+optgraph 2.2.0
 Sven Thiele &lt;sthiele78@gmail.com&gt;
 Optgraph confronts interaction graph models with observations of (signed) changes between two
 measured states. Opt-graph computes networks fitting the observation data by removing (or adding) a

diff --git a/docs/guide/guide.md b/docs/guide/guide.md
@@ -1,4 +1,4 @@
-# Iggy - User Guide (version 2.1.1)
+# Iggy - User Guide (version 2.2.0)
 
 Sven Thiele
 
@@ -137,7 +137,7 @@ For more options, you can ask for help as follows:
 
 ```txt
 > iggy -h
-iggy 2.1.1
+iggy 2.2.0
 Sven Thiele <sthiele78@gmail.com>
 Iggy confronts interaction graph models with observations of (signed) changes between two measured
 states (including uncertain observations). Iggy discovers inconsistencies in networks or data,
@@ -465,7 +465,7 @@ For more options, you can ask for help as follows:
 
 ```txt
 > optgraph -h
-optgraph 2.1.1
+optgraph 2.2.0
 Sven Thiele <sthiele78@gmail.com>
 Optgraph confronts interaction graph models with observations of (signed) changes between two
 measured states. Opt-graph computes networks fitting the observation data by removing (or adding) a

diff --git a/docs/index.md b/docs/index.md
@@ -41,7 +41,7 @@ For more options you can ask for help as follows:
 
 ```txt
 > iggy -h
-iggy 2.1.1
+iggy 2.2.0
 Sven Thiele <sthiele78@gmail.com>
 Iggy confronts interaction graph models with observations of (signed) changes between two measured
 states (including uncertain observations). Iggy discovers inconsistencies in networks or data,
@@ -83,7 +83,7 @@ For more options you can ask for help as follows:
 
 ```txt
 > optgraph -h
-optgraph 2.1.1
+optgraph 2.2.0
 Sven Thiele <sthiele78@gmail.com>
 Optgraph confronts interaction graph models with observations of (signed) changes between two
 measured states. Opt-graph computes networks fitting the observation data by removing (or adding) a

diff --git a/src/bin/iggy.rs b/src/bin/iggy.rs
@@ -23,7 +23,7 @@ use iggy::*;
 /// node) and weak predictions (e.g., the value of a node increases or remains unchanged).
 
 #[derive(Clap, Debug)]
-#[clap(version = "2.1.1", author = "Sven Thiele <sthiele78@gmail.com>")]
+#[clap(version = "2.2.0", author = "Sven Thiele <sthiele78@gmail.com>")]
 struct Opt {
     /// Influence graph in CIF format
     #[clap(short = 'n', long = "network", parse(from_os_str))]

diff --git a/src/bin/optgraph.rs b/src/bin/optgraph.rs
@@ -19,7 +19,7 @@ use thiserror::Error;
 #[derive(Clap, Debug)]
 #[clap(
     name = "optgraph",
-    version = "2.1.1",
+    version = "2.2.0",
     author = "Sven Thiele <sthiele78@gmail.com>"
 )]
 struct Opt {