Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Does SEVtras apply to data generated by STRT-seq or SMART-seq2? #24

Open
SayaGoodBye opened this issue Jul 7, 2024 · 1 comment
Open

Comments

@SayaGoodBye
Copy link

Hello, Dr. He. Sorry to bother you again.
I already knew that SEVtras would work with single cell RNA sequencing data produced by the 10x genomics chromium , which is based on droplet sequencing, but I didn't know if SEVtras would work with SMART-seq2 or STRT-seq.
From what I have learned so far, STRT-seq uses single tubes and 96 cells captured via C1 microfluidic chip for single-cell RNA sequencing. In this process, could sEV not be sequenced separately as it is in the droplets produced in the 10x genomics chromium process?
I really want to know that.

@RuiqiaoHe
Copy link
Member

In my opinion, SEVtras can be extended to microwell-based scRNA-seq. The key to determining the application scenario for SEVtras is whether sEVs have been filtered out in the experimental procedure. The cell-free droplet or microwell would have a chance of capturing sEVs.
In your description, STRT-seq with C1 microfluidic chip may be OK for SEVtras, although I haven't tried it myself.

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

2 participants