version-1.5.1
fredjarlier
released this
17 Mar 17:54
·
33 commits
to master
since this release
version-1.5.1
- fix bug in trimmed fastq condition (thanks to Jianshu) (issue #45) (issue #51)
- fix load balancing (thanks to Vasim) (issue #47)
- overlap writing and computing (only done for mpiBWA) (issue #48)
- NEW! shared memory reference is no more the defaut placement. By default reference is shared by individual mpi job (issue #43)
- NEW! add NUMA aware option -z for placement in memory of the reference genome
options available with openMPI are shared, socket, numa, l1, l2, l3, core
options available for other MPI are shared, core
from experiences pinning mpi jobs by numa and sharing
the reference by numa has the better throughput (see documentation) (thanks to tahashmi) (issue #43)