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@bioinfologics

bioinfologics

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  1. sdg sdg Public

    Sequence Distance Graph framework: graph + reads + mapping + analysis

    C++ 25 6

  2. w2rap-contigger w2rap-contigger Public

    An Illumina PE genome contig assembler, can handle large (17Gbp) complex (hexaploid) genomes.

    C++ 44 14

  3. w2rap w2rap Public

    WGS (Wheat) Robust Assembly Pipeline

    Python 22 8

Repositories

Showing 10 of 13 repositories
  • sdg-assemblers Public

    Assembly pipelines based on sdg

    bioinfologics/sdg-assemblers’s past year of commit activity
    Python 0 MIT 1 0 0 Updated Nov 26, 2022
  • w2rap-contigger Public

    An Illumina PE genome contig assembler, can handle large (17Gbp) complex (hexaploid) genomes.

    bioinfologics/w2rap-contigger’s past year of commit activity
    C++ 44 MIT 14 18 0 Updated Nov 25, 2022
  • sdg-threader Public

    A hybrid short-and-long read pipeline to analyse complex genomes.

    bioinfologics/sdg-threader’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Jun 22, 2022
  • sdg Public

    Sequence Distance Graph framework: graph + reads + mapping + analysis

    bioinfologics/sdg’s past year of commit activity
    C++ 25 MIT 6 20 0 Updated Jun 4, 2022
  • satsuma2 Public

    FFT cross-correlation based synteny aligner, (re)designed to make full use of parallel computing

    bioinfologics/satsuma2’s past year of commit activity
    C++ 41 13 24 2 Updated Dec 21, 2021
  • bioinfologics.github.io Public

    bioinfolgics website

    bioinfologics/bioinfologics.github.io’s past year of commit activity
    HTML 1 2 0 0 Updated Sep 4, 2021
  • skm-tools Public

    Skip-mer tools

    bioinfologics/skm-tools’s past year of commit activity
    Slash 9 MIT 4 0 0 Updated Sep 4, 2021
  • sdg_examples Public

    SDG examples

    bioinfologics/sdg_examples’s past year of commit activity
    HTML 0 2 0 0 Updated Sep 4, 2021
  • Pseudoseq.jl Public

    Fake genomes, fake sequencing, real insights.

    bioinfologics/Pseudoseq.jl’s past year of commit activity
    Julia 13 MIT 3 3 0 Updated Sep 4, 2021
  • wgs-puzzler Public

    A simpler wgs puzzle maker

    bioinfologics/wgs-puzzler’s past year of commit activity
    Python 0 MIT 1 5 0 Updated Sep 4, 2021
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