PROT_2024_main.md

layout	permalink	title	header1	header2	image	length
workshop_main_2day	/PROT_2024	PROT 2024	Workshop Pages for Students	Proteomics 2024	/site_images/PROT_logo.jpg	3 days

Welcome

Welcome to Proteomics 2024.

The course schedule can be found here

Pre-Workshop Materials

Pre-work including programs to install, tutorials, and readings can be found here.

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AWS Module

Log into your Windows server at AWS

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Class photo

CBW Proteomics Class of 2024
Proteomics Social

Data Download

Data files used for this workshop are available here:

DDA
DIA-NN
Module 5 Lab (R)

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Day 1

Module 1: Introduction to mass spectrometry and proteomics

Jennifer Geddes-McAlister

Module 1 Lecture Slides
Module 1 Lecture Recording

Module 2: Experimental design and analytical strategies

Florence Roux-Dalvai

Module 2 Lecture Slides
Module 2 Lecture Recording

Facility Tour

Facility Tour Slides

Module 3: Introduction to software platforms

Jennifer Geddes-McAlister

Module 3 Lecture Slides
Module 3 Lecture Recording

Day 2

Module 4: Data-Independent Acquisition (DIA) analysis

Florence Roux-Dalvai

Module 4 Lecture Slides
Module 4 Lecture Recording
Module 4 Lab Slides

Module 5: Best practices in data analysis, statistics, & visualization

Ben Muselius & Jennifer Geddes-McAlister

Module 5 Lecture Slides
Module 5 Lecture Recording

Module 5 Lab Slides: DIA-NN post-processing

Base R Cheat Sheet
Data Visualization Cheat Sheet
RMarkdown Cheat Sheet

Day 3

Module 6: Considerations and tools for complex datasets

Jennifer Geddes-McAlister

Module 6 Lecture Slides
Module 6 Lecture Recording

Module 7: Multi-omics integration & current and future advances of AI in proteomics

Marie Pier Scott-Boyer & Mickael Leclercq

Module 7.1 Lecture Slides: Multi-Omics Integration
Module 7.1 Lecture Recording

Module 7.2 Lecture Slides: Current and future advances of AI in proteomics Module 7.2 Lecture Recording