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Issues list

problems parsing output from latest obographs library
#697 opened Nov 1, 2024 by balhoff
@sierra-moxon
1
Current version of ontobio, in some cases, has trouble parsing GAF(?) bug
#689 opened Aug 21, 2024 by kltm
1
@dustine32 @sierra-moxon
1
ontobio is not HTTPS-safe bug
#688 opened Aug 20, 2024 by kltm
1
ontobio pull request failing workflow actions due to Monarch
#671 opened Mar 26, 2024 by mugitty
1
sqlite3.DatabaseError: file is not a database
#652 opened Oct 17, 2023 by AITCM
enrichment_test() function not returning anything
#628 opened Aug 24, 2022 by kcortes133
EcoMap should parse eco.owl as ontology enhancement
#624 opened May 11, 2022 by dustine32
1
"category" field in Token should be "categories"
#615 opened Mar 1, 2022 by falquaddoomi
Cannot render subgraphs using GraphRenderer
#612 opened Jan 27, 2022 by remerjohnson
ontobio output to obograph?
#608 opened Dec 2, 2021 by dosumis
loading local json files fails
#607 opened Dec 1, 2021 by dosumis
1
ogr bug?
#606 opened Dec 1, 2021 by dosumis
1
ModuleNotFoundError: No module named ‘ontobio.graph_io'
#597 opened Nov 1, 2021 by realmarcin
get_minimal_subgraph gives "RecursionError: maximum recursion depth exceeded"
#596 opened Oct 20, 2021 by realmarcin
What does this repo do? Please improve the readme
#586 opened Sep 9, 2021 by cthoyt
Run GO rule 20 (obsolete term repair) before GO rule 28 (term aspect check)
#576 opened Jun 15, 2021 by dustine32
@dustine32
2
There should be a way to exclude some GO rules when parsing a GAF file
#544 opened Mar 26, 2021 by valearna
@dougli1sqrd
6
generate reports on differences in two gpad2.0 files
#540 opened Mar 17, 2021 by sierra-moxon
2 tasks
@sierra-moxon
5
synonym parsing skips synonyms with xsd:string declared
#534 opened Mar 4, 2021 by goodb
2
Test notebooks along side the usual suite of tests
#520 opened Feb 9, 2021 by deepakunni3
Fix filepaths for resources in tests
#519 opened Feb 9, 2021 by deepakunni3
Separate out unit and integration tests
#518 opened Feb 9, 2021 by deepakunni3
1
Use behind proxy
#516 opened Feb 8, 2021 by BenoitTS
2
GPI 2.0 support with GPAD 2.0
#511 opened Jan 27, 2021 by dougli1sqrd
@dougli1sqrd
handling multiple rdfs labels
#510 opened Jan 27, 2021 by goodb
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