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GoRule 57 update and test for issue #473 #474

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GoRule 57 update and test for issue #473 #474

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4 changes: 4 additions & 0 deletions ontobio/io/qc.py
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Original file line number Diff line number Diff line change
Expand Up @@ -576,6 +576,10 @@ def test(self, annotation: association.GoAssociation, config: assocparser.AssocP
if annotation.evidence.type in evidence_codes:
return self._result(False)

provided_bys = config.group_metadata.get("filter_for", {}).get("provided_by", [])
if provided_bys and str(annotation.provided_by) not in provided_bys:
return self._result(False)

evidences_references = config.group_metadata.get("filter_out", {}).get("evidence_reference", [])
for er in evidences_references:
evidence_code = er["evidence"]
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14 changes: 14 additions & 0 deletions tests/test_qc.py
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Original file line number Diff line number Diff line change
Expand Up @@ -638,6 +638,9 @@ def test_gorule57():
}
],
"annotation_properties": ["noctua-model-id"]
},
"filter_for": {
"provided_by": ["MGI"]
}
})
test_result = qc.GoRule57().test(assoc, config)
Expand All @@ -658,6 +661,17 @@ def test_gorule57():
test_result = qc.GoRule57().test(assoc, config)
assert test_result.result_type == qc.ResultType.PASS

assoc.provided_by = "UniProt"
test_result = qc.GoRule57().test(assoc, config)
assert test_result.result_type == qc.ResultType.ERROR

# Ensure null "filter_for" doesn't break anything
assoc.provided_by = "MGI"
config.group_metadata.pop("filter_for")
test_result = qc.GoRule57().test(assoc, config)
assert test_result.result_type == qc.ResultType.PASS


def test_gorule58():
a = ["blah"] * 16

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