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add go-site testing to the ontobio doc #701

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add go-site testing to the ontobio doc #701

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18 changes: 18 additions & 0 deletions bin/README.md
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Original file line number Diff line number Diff line change
Expand Up @@ -21,6 +21,24 @@ poetry run validate produce -m ../go-site/metadata --gpad -t . -o go-basic.json
poetry run validate produce -m ../go-site/metadata --gpad -t . -o go-basic.json --base-download-url "http://snapshot.geneontology..org/" --only-dataset zfin ZFIN --gpad-gpi-output-version 2.0
```

a secondary step, is to test the new release via the go-site repository that is running from the GO pipeline

```bash
cd ../go-site
git pull origin master
cd pipeline
mkdir -p target
python3 -m venv env
. env/bin/activate
pip install -r requirements.txt # if need be, update to latest ontobio release to test new code changes.
touch target/groups/rnacentral/rnacentral.gaferences.json
rm -f target/go-ontology.json
BRANCH_NAME=snapshot
ONTOLOGY=http://skyhook.berkeleybop.org/snapshot/ontology/go.json
make target/groups/rnacentral/rnacentral.group
```


To test whether a GAF file is valid (passes all the GORules):
```bash
poetry install
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