Code

Classifier package ppg#109

Code

Merged

KarsVeldkamp merged 96 commits intomainbiomarkersParkinson/paradigma:mainfrom classifier-package-ppgbiomarkersParkinson/paradigma:classifier-package-ppgCopy head branch name to clipboardJan 16, 2025

+101-11,646

Commits

Commits on Dec 3, 2024

• Start heart rate estimation including tfd

  KarsVeldkamp

  committed
  0cb88b0

  Copy full SHA for 0cb88b0

• Merge branch 'main' of https://github.com/biomarkersParkinson/paradigma into heart_rate_estimation

  KarsVeldkamp

  committed
  d1b0bca

  Copy full SHA for d1b0bca

• stash updates

  KarsVeldkamp

  committed
  0c639e1

  Copy full SHA for 0c639e1

Commits on Dec 4, 2024

• Merge branch 'main' of https://github.com/biomarkersParkinson/paradigma into heart_rate_estimation

  KarsVeldkamp

  committed
  4d0b4ab

  Copy full SHA for 4d0b4ab

• update based on merge conflicts

  KarsVeldkamp

  committed
  9b17130

  Copy full SHA for 9b17130

Commits on Dec 6, 2024

• update hr main function

  KarsVeldkamp

  committed
  6184107

  Copy full SHA for 6184107

• Merge branch 'main' of https://github.com/biomarkersParkinson/paradigma into heart_rate_estimation

  KarsVeldkamp

  committed
  747a427

  Copy full SHA for 747a427

• update minor stuff matlab files

  KarsVeldkamp

  committed
  ab3e4bf

  Copy full SHA for ab3e4bf

• change tfd parameters to dict

  KarsVeldkamp

  committed
  44190aa

  Copy full SHA for 44190aa

Commits on Dec 11, 2024

• First steps to refactoring to numpy

  Erikpostt

  committed
  e3c8703

  Copy full SHA for e3c8703

• Merge branch 'main' of https://github.com/biomarkersParkinson/paradigma into heart_rate_estimation

  KarsVeldkamp

  committed
  53e9665

  Copy full SHA for 53e9665

• Finalizing heart rate pipeline plus renaming preprocessing to acc instead of imu

  KarsVeldkamp

  committed
  bd0f46f

  Copy full SHA for bd0f46f

• setting execution count to null

  KarsVeldkamp

  committed
  3aad804

  Copy full SHA for 3aad804

• fix output types

  KarsVeldkamp

  committed
  937ea0e

  Copy full SHA for 937ea0e

• fixing pytype due to old configs

  KarsVeldkamp

  committed
  9938768

  Copy full SHA for 9938768

Commits on Dec 12, 2024

• fix min_hr_samples pytype error

  KarsVeldkamp

  committed
  8ede2ae

  Copy full SHA for 8ede2ae

Commits on Dec 30, 2024

• remove irrelevant config

  KarsVeldkamp

  committed
  3037503

  Copy full SHA for 3037503

• resolved comments PR reviewer

  KarsVeldkamp

  committed
  122f955

  Copy full SHA for 122f955

• Merge branch 'main' of https://github.com/biomarkersParkinson/paradigma into heart_rate_estimation

  KarsVeldkamp

  committed
  e59b811

  Copy full SHA for e59b811

• remove data type since it causes pytype error

  KarsVeldkamp

  committed
  c720677

  Copy full SHA for c720677

• clear execution count

  KarsVeldkamp

  committed
  5a0ec6b

  Copy full SHA for 5a0ec6b

• Merge branch 'pandas-to-numpy-ppg' of https://github.com/biomarkersParkinson/paradigma into pandas-to-numpy-ppg

  KarsVeldkamp

  committed
  dfa313d

  Copy full SHA for dfa313d

Commits on Dec 31, 2024

• import heart_rate_estimation

  KarsVeldkamp

  committed
  8d76ba0

  Copy full SHA for 8d76ba0

• Merge branch 'main' of https://github.com/biomarkersParkinson/paradigma into pandas-to-numpy-ppg

  KarsVeldkamp

  committed
  e3b526b

  Copy full SHA for e3b526b

• merge updates

  KarsVeldkamp

  committed
  2bff61c

  Copy full SHA for 2bff61c

Commits on Jan 2, 2025

• Merge branch 'create-prepared-data' of https://github.com/biomarkersParkinson/paradigma into pandas-to-numpy-ppg

  KarsVeldkamp

  committed
  6a1298f

  Copy full SHA for 6a1298f

• update ppg_analysis

  KarsVeldkamp

  committed
  e571514

  Copy full SHA for e571514

• Merge branch 'main' of https://github.com/biomarkersParkinson/paradigma into pandas-to-numpy-ppg

  KarsVeldkamp

  committed
  b907cf6

  Copy full SHA for b907cf6

Commits on Jan 4, 2025

• replace df to numpy arrays

  KarsVeldkamp

  committed
  07072a9

  Copy full SHA for 07072a9

• fix notebook

  KarsVeldkamp

  committed
  0a1858a

  Copy full SHA for 0a1858a

Commits on Jan 6, 2025

• adding accelerometer feature

  KarsVeldkamp

  committed
  c3d78cf

  Copy full SHA for c3d78cf

• fix type error list vs float

  KarsVeldkamp

  committed
  4d660df

  Copy full SHA for 4d660df

• implement accelerometer feature

  KarsVeldkamp

  committed
  b32e2cb

  Copy full SHA for b32e2cb

Commits on Jan 7, 2025

• update matlab file based on refactoring

  KarsVeldkamp

  committed
  5a3a63a

  Copy full SHA for 5a3a63a

• fixing types, docstrings and readibility

  KarsVeldkamp

  committed
  0733465

  Copy full SHA for 0733465

• Merge branch 'pandas-to-numpy-ppg' of https://github.com/biomarkersParkinson/paradigma into adding-accelerometer-to-ppg

  KarsVeldkamp

  committed
  517069a

  Copy full SHA for 517069a

• adding documentation acc feature

  KarsVeldkamp

  committed
  be35838

  Copy full SHA for be35838

• add documentation of autocorrelation

  KarsVeldkamp

  committed
  d8676c1

  Copy full SHA for d8676c1

• Merge branch 'pandas-to-numpy-ppg' of https://github.com/biomarkersParkinson/paradigma into adding-accelerometer-to-ppg

  KarsVeldkamp

  committed
  8136edc

  Copy full SHA for 8136edc

• adjust classification and HR estimation based on accelerometer

  KarsVeldkamp

  committed
  f0b8b11

  Copy full SHA for f0b8b11

Commits on Jan 8, 2025

• Made requested changes

  KarsVeldkamp

  committed
  26fa21e

  Copy full SHA for 26fa21e

• fix config

  KarsVeldkamp

  committed
  5bcf723

  Copy full SHA for 5bcf723

• Merge branch 'main' of https://github.com/biomarkersParkinson/paradigma into heart-rate-aggregation

  KarsVeldkamp

  committed
  dfeb348

  Copy full SHA for dfeb348

Commits on Jan 9, 2025

• adding aggregation heart rate

  KarsVeldkamp

  committed
  6ef509a

  Copy full SHA for 6ef509a

• Merge branch 'main' of https://github.com/biomarkersParkinson/paradigma into heart-rate-aggregation

  KarsVeldkamp

  committed
  f05769d

  Copy full SHA for f05769d

Commits on Jan 10, 2025

• Merge branch 'main' of https://github.com/biomarkersParkinson/paradigma into heart-rate-aggregation

  KarsVeldkamp

  committed
  c8ce22f

  Copy full SHA for c8ce22f

• update aggregates

  KarsVeldkamp

  committed
  324a721

  Copy full SHA for 324a721

• remove config

  KarsVeldkamp

  committed
  de8be11

  Copy full SHA for de8be11

• Merge branch 'main' of https://github.com/biomarkersParkinson/paradigma into heart-rate-aggregation

  KarsVeldkamp

  committed
  0b717fb

  Copy full SHA for 0b717fb

• Merge branch 'heart-rate-aggregation' of https://github.com/biomarkersParkinson/paradigma into tutorial-ppg

  KarsVeldkamp

  committed
  8250869

  Copy full SHA for 8250869

• add start tutorial

  KarsVeldkamp

  committed
  4e9b41c

  Copy full SHA for 4e9b41c

• aggregation implementation with dictionary

  KarsVeldkamp

  committed
  9c62e31

  Copy full SHA for 9c62e31

• Merge branch 'main' of https://github.com/biomarkersParkinson/paradigma into heart-rate-aggregation

  KarsVeldkamp

  committed
  e10afd9

  Copy full SHA for e10afd9

• add lines for consistency

  KarsVeldkamp

  committed
  6848312

  Copy full SHA for 6848312

• moved windoweddataextractor to segmenting

  KarsVeldkamp

  committed
  25de2c6

  Copy full SHA for 25de2c6

• Merge branch 'heart-rate-aggregation' of https://github.com/biomarkersParkinson/paradigma into tutorial-ppg

  KarsVeldkamp

  committed
  001facd

  Copy full SHA for 001facd

• Merge branch 'main' of https://github.com/biomarkersParkinson/paradigma into tutorial-ppg

  KarsVeldkamp

  committed
  af9306e

  Copy full SHA for af9306e

• resolve merge conflict

  KarsVeldkamp

  committed
  e4cd003

  Copy full SHA for e4cd003

Commits on Jan 12, 2025

• update loading + preprocessing with seperate functionality

  KarsVeldkamp

  committed
  35c107b

  Copy full SHA for 35c107b

Commits on Jan 13, 2025

• update tutorial notebook and corresponding notebook

  KarsVeldkamp

  committed
  d630160

  Copy full SHA for d630160

• Merge branch 'main' of https://github.com/biomarkersParkinson/paradigma into tutorial-ppg

  KarsVeldkamp

  committed
  345aac0

  Copy full SHA for 345aac0

• Update test to io function

  KarsVeldkamp

  committed
  3175d06

  Copy full SHA for 3175d06

• Merge branch 'main' of https://github.com/biomarkersParkinson/paradigma into classifier-package-ppg

  KarsVeldkamp

  committed
  ab50cb9

  Copy full SHA for ab50cb9

• Merge branch 'main' of https://github.com/biomarkersParkinson/paradigma into tutorial-ppg

  KarsVeldkamp

  committed
  9967cc3

  Copy full SHA for 9967cc3

• update tutorial and notebook with simplified loading of the data

  KarsVeldkamp

  committed
  2f860ef

  Copy full SHA for 2f860ef

• Merge branch 'tutorial-ppg' of https://github.com/biomarkersParkinson/paradigma into classifier-package-ppg

  KarsVeldkamp

  committed
  89bd570

  Copy full SHA for 89bd570

• Reset execution counts in notebook cells

  Erikpostt

  authored
  6f2efa2

  Copy full SHA for 6f2efa2

• update execution_counts and output

  KarsVeldkamp

  committed
  1eb821e

  Copy full SHA for 1eb821e

• Updates from PR feedback

  KarsVeldkamp

  committed
  40e768a

  Copy full SHA for 40e768a

• Merge branch 'main' of https://github.com/biomarkersParkinson/paradigma into tutorial-ppg

  KarsVeldkamp

  committed
  9f1442e

  Copy full SHA for 9f1442e

• Merge branch 'main' into tutorial-ppg

  KarsVeldkamp

  authored
  854d5fc

  Copy full SHA for 854d5fc

• Merge branch 'tutorial-ppg' of https://github.com/biomarkersParkinson/paradigma into tutorial-ppg

  KarsVeldkamp

  committed
  81c6580

  Copy full SHA for 81c6580

• fix type error

  KarsVeldkamp

  committed
  440160c

  Copy full SHA for 440160c

• Merge branch 'main' of https://github.com/biomarkersParkinson/paradigma into classifier-package-ppg

  KarsVeldkamp

  committed
  f56d61e

  Copy full SHA for f56d61e

• Merge branch 'tutorial-ppg' of https://github.com/biomarkersParkinson/paradigma into classifier-package-ppg

  KarsVeldkamp

  committed
  372caf1

  Copy full SHA for 372caf1

• remove unneccessary matlab files

  KarsVeldkamp

  committed
  c32b6f0

  Copy full SHA for c32b6f0

Commits on Jan 14, 2025

• Merge branch 'main' of https://github.com/biomarkersParkinson/paradigma into classifier-package-ppg

  KarsVeldkamp

  committed
  27e4b2f

  Copy full SHA for 27e4b2f

• update merge conflicts

  KarsVeldkamp

  committed
  35caf47

  Copy full SHA for 35caf47

Commits on Jan 15, 2025

• Merge branch 'main' of https://github.com/biomarkersParkinson/paradigma into classifier-package-ppg

  KarsVeldkamp

  committed
  dee411a

  Copy full SHA for dee411a

Commits on Jan 16, 2025

• Merge branch 'main' of https://github.com/biomarkersParkinson/paradigma into classifier-package-ppg

  KarsVeldkamp

  committed
  93e3691

  Copy full SHA for 93e3691

• update using classifier package

  KarsVeldkamp

  committed
  4bb700f

  Copy full SHA for 4bb700f

• fix pkl feature names in scaler and delete old classifier files

  KarsVeldkamp

  committed
  5f47239

  Copy full SHA for 5f47239

• Merge branch 'main' of https://github.com/biomarkersParkinson/paradigma into classifier-package-ppg

  KarsVeldkamp

  committed
  f03cb2b

  Copy full SHA for f03cb2b

• renaming ppg to heart rate

  KarsVeldkamp

  committed
  085ab42

  Copy full SHA for 085ab42

• rename files ppg to heart_rate

  KarsVeldkamp

  committed
  493fbf1

  Copy full SHA for 493fbf1

• remove legacy classification

  KarsVeldkamp

  committed
  8da594f

  Copy full SHA for 8da594f

• renaming clf_package

  KarsVeldkamp

  committed
  11e1dd6

  Copy full SHA for 11e1dd6

• modify tutorial

  KarsVeldkamp

  committed
  9612e4e

  Copy full SHA for 9612e4e

• update abs stats

  KarsVeldkamp

  committed
  c8b5899

  Copy full SHA for c8b5899

• update tutorial based on abs stats output

  KarsVeldkamp

  committed
  ebcbf95

  Copy full SHA for ebcbf95

• Remove redundant stuff from notebook

  KarsVeldkamp

  committed
  b48d3b4

  Copy full SHA for b48d3b4

• remove tremor txt files

  KarsVeldkamp

  committed
  861c68a

  Copy full SHA for 861c68a

• update tutorial based on right config settings

  KarsVeldkamp

  committed
  518f01e

  Copy full SHA for 518f01e

• type error fix

  KarsVeldkamp

  committed
  45f8945

  Copy full SHA for 45f8945

• fix type error

  KarsVeldkamp

  committed
  00da01d

  Copy full SHA for 00da01d

• update based on suggestions

  KarsVeldkamp

  committed
  ef6e258

  Copy full SHA for ef6e258