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Sphinx committed Aug 28, 2024
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12 changes: 6 additions & 6 deletions dev/api/Bio.SeqIO.IgIO.html
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Expand Up @@ -156,9 +156,9 @@
new line characters in the SeqRecord’s annotations dictionary under the
key ‘comment’.</p>
<p class="rubric">Examples</p>
<div class="doctest highlight-default notranslate"><div class="highlight"><pre><span></span><span class="gp">&gt;&gt;&gt; </span><span class="k">with</span> <span class="nb">open</span><span class="p">(</span><span class="s2">&quot;IntelliGenetics/TAT_mase_nuc.txt&quot;</span><span class="p">)</span> <span class="k">as</span> <span class="n">handle</span><span class="p">:</span>
<span class="gp">... </span> <span class="k">for</span> <span class="n">record</span> <span class="ow">in</span> <span class="n">IgIterator</span><span class="p">(</span><span class="n">handle</span><span class="p">):</span>
<span class="gp">... </span> <span class="nb">print</span><span class="p">(</span><span class="s2">&quot;</span><span class="si">%s</span><span class="s2"> length </span><span class="si">%i</span><span class="s2">&quot;</span> <span class="o">%</span> <span class="p">(</span><span class="n">record</span><span class="o">.</span><span class="n">id</span><span class="p">,</span> <span class="nb">len</span><span class="p">(</span><span class="n">record</span><span class="p">)))</span>
<div class="doctest highlight-default notranslate"><div class="highlight"><pre><span></span><span class="gp">&gt;&gt;&gt; </span><span class="k">with</span> <span class="nb">open</span><span class="p">(</span><span class="s2">&quot;IntelliGenetics/TAT_mase_nuc.txt&quot;</span><span class="p">)</span> <span class="k">as</span> <span class="n">stream</span><span class="p">:</span>
<span class="gp">... </span> <span class="k">for</span> <span class="n">record</span> <span class="ow">in</span> <span class="n">IgIterator</span><span class="p">(</span><span class="n">stream</span><span class="p">):</span>
<span class="gp">... </span> <span class="nb">print</span><span class="p">(</span><span class="sa">f</span><span class="s2">&quot;</span><span class="si">{</span><span class="n">record</span><span class="o">.</span><span class="n">id</span><span class="si">}</span><span class="s2"> length </span><span class="si">{</span><span class="nb">len</span><span class="p">(</span><span class="n">record</span><span class="p">)</span><span class="si">}</span><span class="s2">&quot;</span><span class="p">)</span>
<span class="gp">...</span>
<span class="go">A_U455 length 303</span>
<span class="go">B_HXB2R length 306</span>
Expand All @@ -184,12 +184,12 @@
<dl class="py method">
<dt class="sig sig-object py" id="Bio.SeqIO.IgIO.IgIterator.parse">
<span class="sig-name descname"><span class="pre">parse</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">handle</span></span></em><span class="sig-paren">)</span><a class="headerlink" href="#Bio.SeqIO.IgIO.IgIterator.parse" title="Link to this definition"></a></dt>
<dd><p>Start parsing the file, and return a SeqRecord generator.</p>
<dd><p>To be removed.</p>
</dd></dl>

<dl class="py method">
<dt class="sig sig-object py" id="Bio.SeqIO.IgIO.IgIterator.iterate">
<span class="sig-name descname"><span class="pre">iterate</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">handle</span></span></em><span class="sig-paren">)</span><a class="headerlink" href="#Bio.SeqIO.IgIO.IgIterator.iterate" title="Link to this definition"></a></dt>
<dt class="sig sig-object py" id="Bio.SeqIO.IgIO.IgIterator.__next__">
<span class="sig-name descname"><span class="pre">__next__</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#Bio.SeqIO.IgIO.IgIterator.__next__" title="Link to this definition"></a></dt>
<dd><p>Iterate over the records in the IntelliGenetics file.</p>
</dd></dl>

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2 changes: 1 addition & 1 deletion dev/api/Bio.SeqIO.html
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Expand Up @@ -203,7 +203,7 @@ <h2>Submodules<a class="headerlink" href="#submodules" title="Link to this headi
<li class="toctree-l2"><a class="reference internal" href="Bio.SeqIO.IgIO.html#Bio.SeqIO.IgIO.IgIterator"><code class="docutils literal notranslate"><span class="pre">IgIterator</span></code></a><ul>
<li class="toctree-l3"><a class="reference internal" href="Bio.SeqIO.IgIO.html#Bio.SeqIO.IgIO.IgIterator.__init__"><code class="docutils literal notranslate"><span class="pre">IgIterator.__init__()</span></code></a></li>
<li class="toctree-l3"><a class="reference internal" href="Bio.SeqIO.IgIO.html#Bio.SeqIO.IgIO.IgIterator.parse"><code class="docutils literal notranslate"><span class="pre">IgIterator.parse()</span></code></a></li>
<li class="toctree-l3"><a class="reference internal" href="Bio.SeqIO.IgIO.html#Bio.SeqIO.IgIO.IgIterator.iterate"><code class="docutils literal notranslate"><span class="pre">IgIterator.iterate()</span></code></a></li>
<li class="toctree-l3"><a class="reference internal" href="Bio.SeqIO.IgIO.html#Bio.SeqIO.IgIO.IgIterator.__next__"><code class="docutils literal notranslate"><span class="pre">IgIterator.__next__()</span></code></a></li>
<li class="toctree-l3"><a class="reference internal" href="Bio.SeqIO.IgIO.html#Bio.SeqIO.IgIO.IgIterator.__abstractmethods__"><code class="docutils literal notranslate"><span class="pre">IgIterator.__abstractmethods__</span></code></a></li>
<li class="toctree-l3"><a class="reference internal" href="Bio.SeqIO.IgIO.html#Bio.SeqIO.IgIO.IgIterator.__parameters__"><code class="docutils literal notranslate"><span class="pre">IgIterator.__parameters__</span></code></a></li>
</ul>
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4 changes: 2 additions & 2 deletions dev/genindex.html
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Expand Up @@ -1947,6 +1947,8 @@ <h2 id="_">_</h2>
<li><a href="api/Bio.Nexus.StandardData.html#Bio.Nexus.StandardData.StandardData.__next__">(Bio.Nexus.StandardData.StandardData method)</a>
</li>
<li><a href="api/Bio.SeqIO.AbiIO.html#Bio.SeqIO.AbiIO.AbiIterator.__next__">(Bio.SeqIO.AbiIO.AbiIterator method)</a>
</li>
<li><a href="api/Bio.SeqIO.IgIO.html#Bio.SeqIO.IgIO.IgIterator.__next__">(Bio.SeqIO.IgIO.IgIterator method)</a>
</li>
<li><a href="api/Bio.SeqIO.Interfaces.html#Bio.SeqIO.Interfaces.SequenceIterator.__next__">(Bio.SeqIO.Interfaces.SequenceIterator method)</a>
</li>
Expand Down Expand Up @@ -8626,8 +8628,6 @@ <h2 id="I">I</h2>

<ul>
<li><a href="api/Bio.SeqIO.FastaIO.html#Bio.SeqIO.FastaIO.FastaTwoLineIterator.iterate">(Bio.SeqIO.FastaIO.FastaTwoLineIterator method)</a>
</li>
<li><a href="api/Bio.SeqIO.IgIO.html#Bio.SeqIO.IgIO.IgIterator.iterate">(Bio.SeqIO.IgIO.IgIterator method)</a>
</li>
<li><a href="api/Bio.SeqIO.NibIO.html#Bio.SeqIO.NibIO.NibIterator.iterate">(Bio.SeqIO.NibIO.NibIterator method)</a>
</li>
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2 changes: 1 addition & 1 deletion dev/searchindex.js
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