Force search of other raw data dirs when project name is non conforming #784
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: ci | |
| on: | |
| pull_request: | |
| branches: | |
| - main | |
| jobs: | |
| unit_tests: | |
| name: Run unit tests suite | |
| runs-on: ubuntu-22.04 | |
| steps: | |
| - name: Checkout source | |
| uses: actions/checkout@v4 | |
| - name: Cache nox environment for unit tests | |
| uses: actions/cache@v3 | |
| with: | |
| path: ~/work/metatlas/metatlas/.nox | |
| key: ${{ runner.os }}-nox | |
| - name: Setup nox | |
| uses: daisylb/setup-nox@c375841575e07f30359a5843bf0bffa7aa596782 | |
| - name: Run unit tests | |
| run: nox -s unit_tests-3.11 | |
| system_test1: | |
| name: Run system test 1 - HILIC targeted | |
| runs-on: ubuntu-22.04 | |
| steps: | |
| - name: Checkout source | |
| uses: actions/checkout@v4 | |
| - name: Setup nox | |
| uses: daisylb/setup-nox@c375841575e07f30359a5843bf0bffa7aa596782 | |
| - name: Run system tests | |
| run: nox -s system_tests-3.11 -- -k test_targeted | |
| system_test2: | |
| name: Run system test 2 - RT alignment | |
| runs-on: ubuntu-22.04 | |
| steps: | |
| - name: Checkout source | |
| uses: actions/checkout@v4 | |
| - name: Setup nox | |
| uses: daisylb/setup-nox@c375841575e07f30359a5843bf0bffa7aa596782 | |
| - name: Run system tests | |
| run: nox -s system_tests-3.11 -- -k test_rt_alignment | |
| system_test3: | |
| name: Run system test 3 - add MSMS references | |
| runs-on: ubuntu-22.04 | |
| steps: | |
| - name: Checkout source | |
| uses: actions/checkout@v4 | |
| - name: Setup nox | |
| uses: daisylb/setup-nox@c375841575e07f30359a5843bf0bffa7aa596782 | |
| - name: Run system tests | |
| run: nox -s system_tests-3.11 -- -k test_add_msms_ref | |
| system_test4: | |
| name: Run system test 4 - C18 targeted | |
| runs-on: ubuntu-22.04 | |
| steps: | |
| - name: Checkout source | |
| uses: actions/checkout@v4 | |
| - name: Setup nox | |
| uses: daisylb/setup-nox@c375841575e07f30359a5843bf0bffa7aa596782 | |
| - name: Run system tests | |
| run: nox -s system_tests-3.11 -- -k test_c18 | |
| system_test5: | |
| name: Run system test 5 - HILIC Targeted_hybrid | |
| runs-on: ubuntu-22.04 | |
| continue-on-error: true | |
| steps: | |
| - name: Checkout source | |
| uses: actions/checkout@v4 | |
| - name: Setup nox | |
| uses: daisylb/setup-nox@c375841575e07f30359a5843bf0bffa7aa596782 | |
| - name: Run system tests | |
| run: nox -s system_tests-3.11 -- -k test_hybrid |