modify project/file name check to handle NoneTypes #819
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| name: ci | |
| on: | |
| pull_request: | |
| branches: | |
| - main | |
| jobs: | |
| unit_tests: | |
| name: Run unit tests suite | |
| runs-on: ubuntu-22.04 | |
| steps: | |
| - name: Checkout source | |
| uses: actions/checkout@v4 | |
| - name: Cache nox environment for unit tests | |
| uses: actions/cache@v3 | |
| with: | |
| path: ~/work/metatlas/metatlas/.nox | |
| key: ${{ runner.os }}-nox | |
| - name: Setup nox | |
| uses: daisylb/setup-nox@c375841575e07f30359a5843bf0bffa7aa596782 | |
| - name: Run unit tests | |
| run: nox -s unit_tests-3.11 | |
| system_test1: | |
| name: Run system test 1 - HILIC targeted | |
| runs-on: ubuntu-22.04 | |
| steps: | |
| - name: Checkout source | |
| uses: actions/checkout@v4 | |
| - name: Setup nox | |
| uses: daisylb/setup-nox@c375841575e07f30359a5843bf0bffa7aa596782 | |
| - name: Run system tests | |
| run: nox -s system_tests-3.11 -- -k test_targeted | |
| system_test2: | |
| name: Run system test 2 - RT alignment | |
| runs-on: ubuntu-22.04 | |
| steps: | |
| - name: Checkout source | |
| uses: actions/checkout@v4 | |
| - name: Setup nox | |
| uses: daisylb/setup-nox@c375841575e07f30359a5843bf0bffa7aa596782 | |
| - name: Run system tests | |
| run: nox -s system_tests-3.11 -- -k test_rt_alignment | |
| system_test3: | |
| name: Run system test 3 - add MSMS references | |
| runs-on: ubuntu-22.04 | |
| steps: | |
| - name: Checkout source | |
| uses: actions/checkout@v4 | |
| - name: Setup nox | |
| uses: daisylb/setup-nox@c375841575e07f30359a5843bf0bffa7aa596782 | |
| - name: Run system tests | |
| run: nox -s system_tests-3.11 -- -k test_add_msms_ref | |
| system_test4: | |
| name: Run system test 4 - C18 targeted | |
| runs-on: ubuntu-22.04 | |
| steps: | |
| - name: Checkout source | |
| uses: actions/checkout@v4 | |
| - name: Setup nox | |
| uses: daisylb/setup-nox@c375841575e07f30359a5843bf0bffa7aa596782 | |
| - name: Run system tests | |
| run: nox -s system_tests-3.11 -- -k test_c18 | |
| system_test5: | |
| name: Run system test 5 - HILIC Targeted_hybrid | |
| runs-on: ubuntu-22.04 | |
| continue-on-error: true | |
| steps: | |
| - name: Checkout source | |
| uses: actions/checkout@v4 | |
| - name: Setup nox | |
| uses: daisylb/setup-nox@c375841575e07f30359a5843bf0bffa7aa596782 | |
| - name: Run system tests | |
| run: nox -s system_tests-3.11 -- -k test_hybrid |