From 5613f6d323ffe9d8b4e954bf025582940c35ec5c Mon Sep 17 00:00:00 2001 From: Brandon Kieft <162646417+bkieft-usa@users.noreply.github.com> Date: Tue, 15 Oct 2024 16:03:16 -0700 Subject: [PATCH] Remove outdated argument checker to allow for skipping steps --- metatlas/untargeted/run_untargeted_pipeline.py | 3 --- 1 file changed, 3 deletions(-) diff --git a/metatlas/untargeted/run_untargeted_pipeline.py b/metatlas/untargeted/run_untargeted_pipeline.py index 5f78ff7d..aeb07687 100644 --- a/metatlas/untargeted/run_untargeted_pipeline.py +++ b/metatlas/untargeted/run_untargeted_pipeline.py @@ -112,9 +112,6 @@ def check_args(args): args.background_designator = args.background_designator.split(',') if args.skip_steps: args.skip_steps = args.skip_steps.split(',') - if args.skip_steps is not None and args.direct_input is None: - logging.error('Incompatible flags. Must provide direct input if you want to skip steps.') - sys.exit(1) if args.overwrite_drive is True and args.gdrive_upload is False: logging.error('Incompatible flags. Cannot overwrite google drive if not uploading to google drive.') sys.exit(1)