Warn on IA conversion failure.

biosimulators · Oct 18, 2024 · c8e1a79 · c8e1a79
1 parent 74e4f2e
commit c8e1a79
Showing 1 changed file with 2 additions and 0 deletions.
diff --git a/biosimulators_pysces/core.py b/biosimulators_pysces/core.py
@@ -234,6 +234,8 @@ def preprocess_sed_task(task, variables, config=None):
     ia_conv = libsbml.SBMLInitialAssignmentConverter()
     ia_conv.setDocument(sbml_doc)
     success = ia_conv.convert()
+    if success != 0:
+        warn("Initial assignment conversion failed: any initial assignments in this model will remain, which PySCeS may not be able to handle.")
     libsbml.writeSBMLToFile(sbml_doc, sbml_converted_filename)
 
     pysces_model_file, pysces_model_filename = tempfile.mkstemp(suffix='.psc')