removed dependency from multipagetiff

bmandracchia · Oct 1, 2024 · dcedd97 · dcedd97
1 parent 4ec618a
commit dcedd97
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Showing 3 changed files with 9 additions and 2 deletions.
diff --git a/nbs/00_core.ipynb b/nbs/00_core.ipynb
@@ -534,6 +534,10 @@
    "display_name": "python3",
    "language": "python",
    "name": "python3"
+  },
+  "language_info": {
+   "name": "python",
+   "version": "3.11.5"
   }
  },
  "nbformat": 4,

diff --git a/nbs/02_io.ipynb b/nbs/02_io.ipynb
@@ -39,7 +39,6 @@
     "from fastai.vision.all import *\n",
     "from fastai.data.all import *\n",
     "from torchio import ScalarImage, ToCanonical, Resample\n",
-    "import multipagetiff as mtif\n",
     "from aicsimageio import AICSImage\n",
     "import h5py\n",
     "\n",
@@ -547,6 +546,10 @@
    "display_name": "python3",
    "language": "python",
    "name": "python3"
+  },
+  "language_info": {
+   "name": "python",
+   "version": "3.11.5"
   }
  },
  "nbformat": 4,

diff --git a/settings.ini b/settings.ini
@@ -38,6 +38,6 @@ status = 3
 user = bmandracchia
 
 ### Optional ###
-requirements =  pandas aicsimageio==4.14 h5py==3.11 plotly==5.23 fastai==2.7.12 monai==1.2.0 torchio==0.18.91 xlrd>=1.2.0 scikit-image==0.19.3 imagedata==2.1.3 
+requirements =  pandas aicsimageio==4.14 h5py==3.11 plotly==5.23 fastai==2.7.12 monai==1.2.0 torchio==0.18.91 xlrd>=1.2.0 scikit-image==0.19.3 imagedata==2.1.3 pooch==1.8.2 mamba-ssm==2.2.2
 dev_requirements = ipywidgets nbdev-numpy nbdev-stdlib pandas matplotlib nbclassic 
 # console_scripts =