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slendr 0.8.0
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@bodkan bodkan released this 07 Dec 11:17
v0.8.0
f012eba

  • In order to support the new ts_tracts() function backed by the tspop module (see the item below), a new slendr Python environment is required. As such, users will have to run setup_env() to get all the required Python dependencies. (#b5330c)

  • Experimental support for the tspop link-ancestors algorithm for detection of ancestry tracts in the form of a new slendr function ts_tracts(). Only works on slendr-generated msprime tree sequences and "pure" msprime and SLiM tree sequences (not slendr-generated SLiM tree sequences). Please use with caution until things settle down a bit and the new functionality is more extensively tested. Feedback is appreciated! (PR #145)

  • Updated Python dependencies (bugfix pyslim release v1.0.4 and tskit v0.5.6, the latter due to a broken jsonschema dependency of tskit). (#001ee5)

  • Experimental support for manually created spatial tree sequences. (PR #144)

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