diff --git a/docs/source/tutorials/index.md b/docs/source/tutorials/index.md index 61463ceb..305e06b8 100644 --- a/docs/source/tutorials/index.md +++ b/docs/source/tutorials/index.md @@ -49,4 +49,5 @@ brainreg silicon-probe-tracking cellfinder-cli/index tracing-tracking +visualise-atlas-napari ``` \ No newline at end of file diff --git a/docs/source/tutorials/visualise-atlas-napari.md b/docs/source/tutorials/visualise-atlas-napari.md index eef977ed..be47de44 100644 --- a/docs/source/tutorials/visualise-atlas-napari.md +++ b/docs/source/tutorials/visualise-atlas-napari.md @@ -1,4 +1,4 @@ -## Visualise an atlas in napari +# Visualise an atlas in napari BrainGlobe atlases are made of different components. These include the annotations image, the (default) reference image, 3D atlas region meshes and, optionally, additional reference images. In this tutorial, you will use `brainrender-napari` to visualise each of these components in the 3D viewer napari through a series of simple clicks. The [`mpin_zfish_1um` zebrafish brain atlas](https://doi.org/10.1016/j.neuron.2019.04.034) will serve as an example.