Brainhack 2022 Project 9: Contributing to Connectome Mapper 3 2022 Edition

Team members: Isotta Rigoni, Xinyu Liu, Andrea Mckavanagh, Jonathan Wirsich

Targeted tasks

• Make CMP3 compatible with Windows 10

  • see issue: connectomicslab/connectomemapper3#220
  • see fork: https://github.com/jwirsich/connectomemapper3/tree/cmp-win10

• Run DSIstudio as a BIDSapp Docker container taking segmentation/preprocessing from CMP3

Brainhack 2021 Project 4: Contributing to Connectome Mapper 3

Principal Investigator: Sébastien Tourbier (@sebastientourbier)

Team members: Mikkel Schöttner, Jonathan Wirsich, Jakub Jancovic, Anil Tuncel, Stefan Dvoretskii

Targeted tasks

• Implement python wrappers for the docker and singularity run command (Jakub Jancovic, Anil Tuncel) - Github issues #112 #113

• Create a tutorial notebook that illustrates how to (1) query the connectome files produced by CMP3 using pybids, (2) load them with networkx, (3) visualize them, and (4) analyze them with pybct (Mikkel Schöttner) - Github issues #103

• Create PNG images in different interfaces that would be inserted in a HTML report in the future (Stefan Dvoretskii) - Github issues #103

• EEG pipeline (Jonathan Wirsich) - Github issues #6 / Pull Request #82

Please download the PDF to view our final presentation: Download PDF.