Finish SequencePreprocessor #101
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| name: Test Coverage | |
| on: | |
| push: | |
| branches: | |
| - master | |
| pull_request: | |
| branches: | |
| - master | |
| jobs: | |
| test: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Set up Python | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: '3.9' | |
| - name: Install dependencies | |
| run: | | |
| python -m pip install --upgrade pip | |
| pip install -r requirements.txt | |
| pip install pytest pytest-cov | |
| - name: Install cd-hit and mmseqs2 | |
| run: | | |
| sudo apt-get update | |
| sudo apt-get install -y cd-hit | |
| sudo apt-get install -y mmseqs2 | |
| - name: Run tests with coverage and generate XML report | |
| run: | | |
| pytest --cov=./ --cov-report=xml | |
| - name: Upload coverage to Codecov | |
| uses: codecov/codecov-action@v3 | |
| with: | |
| token: ${{ secrets.CODECOV_TOKEN }} | |
| file: ./coverage.xml | |
| fail_ci_if_error: true | |
| env: | |
| MPLBACKEND: Agg |